Jatropha Genome Database

JcCA0154641.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154641.20 - phase: 0 
         (398 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030116001 assembled CDS                                       569   e-163

>GSVIVT01030116001 assembled CDS
          Length = 363

 Score =  569 bits (1466), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/361 (77%), Positives = 308/361 (85%), Gaps = 6/361 (1%)

Query: 37  RFSVASIKAQQAETKEGSATVSAAVKEEVPAATVENALEVKEWEVGMLQNEVAASQXXXX 96
           + SVA ++AQQ+E+K+GSATVS        + + ENAL++KEWEVG  Q+E+AA+Q    
Sbjct: 8   KLSVACVRAQQSESKDGSATVSPL------SDSQENALKIKEWEVGRFQDEIAATQGIRI 61

Query: 97  XXXXXXXXXLHYVGPFEFRIQNEGNTPRNILEEIVWNKDIEVSQLKERKPLSSLKKSLDN 156
                    LHYVGPFEFR+QNEGNTPRNILEEIVWNKD EVSQLKERKPL  LKK+L+N
Sbjct: 62  RRRPPTGPPLHYVGPFEFRLQNEGNTPRNILEEIVWNKDKEVSQLKERKPLGMLKKALEN 121

Query: 157 APPARDFIGALKEANIRTGFPGLIAEVKKASPSRGIIREDFDPVEIAQAYEKGGAACLSV 216
           APP RDFI AL+ +N+RTGFPGLIAEVKKASPSRGI+REDFDPVEIA+AYEKGGAACLSV
Sbjct: 122 APPNRDFIAALRASNLRTGFPGLIAEVKKASPSRGILREDFDPVEIARAYEKGGAACLSV 181

Query: 217 LTDEKYFKGSFENLEAIRNAGVKCPLLCKEFVIDAWQIYYARTKGADAILLIAAVLPDLD 276
           LTDEKYFKGSFENLE IRNAGVKCPLLCKEFV+DAWQIYYARTKGADAILLIAAVLPDLD
Sbjct: 182 LTDEKYFKGSFENLELIRNAGVKCPLLCKEFVVDAWQIYYARTKGADAILLIAAVLPDLD 241

Query: 277 IRYMTKICKMLGLAALVEVHDEREMDRVXXXXXXXXXXXNNRDLETFKVDISNTKKLLQG 336
           IRYMTKICKMLGLAALVEVHDEREMDRV           NNR+L TF+VDISNTKKLL+G
Sbjct: 242 IRYMTKICKMLGLAALVEVHDEREMDRVLGIEGIELIGINNRNLATFEVDISNTKKLLEG 301

Query: 337 ERGEQIRQKGIIVVGESGLFTPEDIAYVQEAGVKAVLVGESIVKQSDPGKGIAGLFGKDI 396
           ERGE IRQK IIVVGESGLFTP D+AYVQEAGVKA+LVGESIVKQ DP  GI GLFGKDI
Sbjct: 302 ERGEIIRQKDIIVVGESGLFTPADVAYVQEAGVKAILVGESIVKQKDPRSGITGLFGKDI 361

Query: 397 S 397
           S
Sbjct: 362 S 362