Jatropha Genome Database

JcCA0154411.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.30 + phase: 0 /partial/short
         (48 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037666001 assembled CDS                                        94   2e-20
GSVIVT01030430001 assembled CDS                                        92   7e-20
GSVIVT01012719001 assembled CDS                                        80   1e-16
GSVIVT01001307001 assembled CDS                                        80   2e-16
GSVIVT01027638001 assembled CDS                                        77   1e-15
GSVIVT01028202001 assembled CDS                                        49   6e-07

>GSVIVT01037666001 assembled CDS
          Length = 119

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 48/48 (100%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MA+SSFKLEHPLERRQAE+ARIREKYPDRIPVIVE+AERSDIPDIDKK
Sbjct: 1  MARSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKK 48


>GSVIVT01030430001 assembled CDS
          Length = 121

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 47/48 (97%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAK SFK+EHPLERRQAE+ARIREKYPDRIPVIVERAE+SDIPDIDKK
Sbjct: 1  MAKISFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDIPDIDKK 48


>GSVIVT01012719001 assembled CDS
          Length = 141

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 45/50 (90%), Gaps = 2/50 (4%)

Query: 1  MAKSS--FKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKSS  FKLEHPLE+RQ E+ARIR+K+PDRIPVIVE+A RSDIP IDKK
Sbjct: 20 MAKSSSNFKLEHPLEKRQTEAARIRKKHPDRIPVIVEKANRSDIPSIDKK 69


>GSVIVT01001307001 assembled CDS
          Length = 122

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/48 (81%), Positives = 44/48 (91%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKS FK EH  E+R+AE+ARIREKYPDRIPVIVE+AERSDIP+IDKK
Sbjct: 1  MAKSYFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKK 48


>GSVIVT01027638001 assembled CDS
          Length = 124

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 44/48 (91%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKS FK EH  E+R+AE+ARIR+KYP+RIPVIVE+AERSDIP+IDKK
Sbjct: 1  MAKSYFKQEHEFEKRRAEAARIRDKYPERIPVIVEKAERSDIPNIDKK 48


>GSVIVT01028202001 assembled CDS
          Length = 124

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 4  SSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          SSFK E   E R  ES  I  KYPDR+PVI ER  ++D+P+++KK
Sbjct: 2  SSFKNEFSYEERLEESRDIIAKYPDRVPVIAERYSKTDLPEMEKK 46