Jatropha Genome Database

JcCA0154411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.20 + phase: 0 
         (172 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037665001 assembled CDS                                       211   1e-55
GSVIVT01010256001 assembled CDS                                        95   2e-20
GSVIVT01036085001 assembled CDS                                        46   8e-06

>GSVIVT01037665001 assembled CDS
          Length = 186

 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 123/166 (74%)

Query: 3   PLLKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGACYA 62
           P LKL+D SLR  VIPLSVA+I L VTNQQ+NS YG L++SNL GLKYMVCIS I A YA
Sbjct: 16  PTLKLIDCSLRLCVIPLSVATIWLTVTNQQDNSIYGKLEFSNLTGLKYMVCISGISAGYA 75

Query: 63  FSAVACTWIRSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACNSF 122
             AV  +W+R LVNK WLFFVSDQIMAYL VTS AA++EI+YLAY GD+ V+WSEAC+S+
Sbjct: 76  LVAVVASWVRCLVNKAWLFFVSDQIMAYLMVTSGAAVLEILYLAYKGDRGVSWSEACSSY 135

Query: 123 GKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPPVSSKQVE 168
           G+FC ++                   ISAYR FS+FEPPVSSK+VE
Sbjct: 136 GRFCSRVNLALALHALALCCFLVLAVISAYRVFSMFEPPVSSKEVE 181


>GSVIVT01010256001 assembled CDS
          Length = 151

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 27  IVTNQQENSSYGDLKYSNLMGLKYMVCISAIGACYAF-SAVACTWIRS-LVNKVWLFFVS 84
           ++ N Q N  +G L YS+L   +Y+V  + I A Y+  SA+     R   +++ W FF+ 
Sbjct: 1   MLKNSQTND-FGSLSYSDLGAFRYLVHANGICAGYSLLSAIFTAMPRPPTMSRAWTFFLL 59

Query: 85  DQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACNSFGKFCHKMKXXXXXXXXXXXXXX 144
           DQ++ YL + + A   E+VYLAY GD+ VTWS+AC+SFG FC K                
Sbjct: 60  DQVLTYLILAAGAVSTEVVYLAYKGDEAVTWSDACSSFGGFCQKTTASISITFVTVLCYA 119

Query: 145 XXXXISAYRAFSVFEPPV--SSKQVE 168
               IS+Y+ FS ++ P+  + K +E
Sbjct: 120 VLSLISSYKLFSKYDAPICFNGKGIE 145


>GSVIVT01036085001 assembled CDS
          Length = 201

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 42  YSNLMGLKYMVCISAIGACYAFSA----VACTWIRSLVNKVWLFFVSDQIMAYLTVTSAA 97
           Y +L    + V  +AI + Y F +    + C      +    L  + D +M  LT+ +AA
Sbjct: 82  YDDLPAFSFFVIANAIASGYLFLSLPFSIVCIVRPHAMGARLLLVICDTVMVALTIAAAA 141

Query: 98  ALMEIVYLAYNGDQEVTWSEACNSFGKFCHKM 129
           A   IVYLA+NG+    W   C  F  FC  +
Sbjct: 142 AAAAIVYLAHNGNSNANWVAICQQFDDFCQSV 173