Jatropha Genome Database

JcCA0154191.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154191.30 - phase: 1 /partial
         (57 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018423001 assembled CDS                                        79   4e-16
GSVIVT01018419001 assembled CDS                                        78   9e-16
GSVIVT01018427001 assembled CDS                                        75   7e-15
GSVIVT01026810001 assembled CDS                                        75   9e-15
GSVIVT01026806001 assembled CDS                                        74   1e-14
GSVIVT01018422001 assembled CDS                                        71   8e-14
GSVIVT01018421001 assembled CDS                                        63   3e-11

>GSVIVT01018423001 assembled CDS
          Length = 619

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 44/50 (88%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSIVS 50
           RR MSAWRVAGI+HALE W V ECG+++++I+K+W+A+L+HGF+PL I S
Sbjct: 570 RRAMSAWRVAGILHALEGWNVHECGHTIFNIEKIWEASLQHGFRPLMIPS 619


>GSVIVT01018419001 assembled CDS
          Length = 281

 Score = 77.8 bits (190), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 42/50 (84%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSIVS 50
           RR MSAWRVAGI+HALE W V ECG++++ I+K+W+A+ +HGF+PL I S
Sbjct: 232 RRAMSAWRVAGILHALEGWNVHECGHTIFDIEKIWEASFQHGFRPLMIPS 281


>GSVIVT01018427001 assembled CDS
          Length = 100

 Score = 75.1 bits (183), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 42/50 (84%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSIVS 50
           RR MSA RVAG++HALE W V ECG +M++I+K+W+A+L HGF+PL+I +
Sbjct: 51  RRAMSASRVAGVIHALEGWNVHECGNTMFNIEKIWEASLHHGFRPLTIPT 100


>GSVIVT01026810001 assembled CDS
          Length = 620

 Score = 74.7 bits (182), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 41/48 (85%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSI 48
           RR MSA RVAG++HALE W V ECG +M++I+K+W+A+L HGF+PL+I
Sbjct: 571 RRAMSASRVAGVIHALEGWNVHECGNTMFNIEKIWEASLHHGFRPLTI 618


>GSVIVT01026806001 assembled CDS
          Length = 620

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 42/48 (87%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSI 48
           RR MSA RVAG++HALE W V ECG +M++++K+W+A+L+HGF+PL++
Sbjct: 571 RRAMSASRVAGVIHALEGWNVHECGNTMFNVEKIWEASLQHGFRPLTV 618


>GSVIVT01018422001 assembled CDS
          Length = 631

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 39/44 (88%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFK 44
           RR MSAWRVAGI+HALE W V ECG++++ I+K+W+A+L+HGF+
Sbjct: 570 RRAMSAWRVAGILHALEGWNVHECGHAIFDIEKIWEASLQHGFQ 613


>GSVIVT01018421001 assembled CDS
          Length = 2763

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQA 37
           RR MSAWRVAGI+HALE W V ECG++++ I+K+W+A
Sbjct: 570 RRAMSAWRVAGILHALEGWNVHECGHTIFDIEKIWEA 606