Jatropha Genome Database

JcCA0154191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154191.10 + phase: 0 /partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026782001 assembled CDS                                       220   3e-58
GSVIVT01027430001 assembled CDS                                       175   8e-45
GSVIVT01018596001 assembled CDS                                       149   8e-37

>GSVIVT01026782001 assembled CDS
          Length = 210

 Score =  220 bits (560), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 121/140 (86%)

Query: 22  TMIQNMIKEGKIVPSEVTIKLLQKAMRESGNDKFLIDGFPRNEENRAAFESVTKIEPEFV 81
            MIQ+MIKEGKIVPSEVTIKLLQ+A+ E  NDKFLIDGFPRNEENRAAFE+VTKIEPEFV
Sbjct: 69  NMIQSMIKEGKIVPSEVTIKLLQRAILEDSNDKFLIDGFPRNEENRAAFEAVTKIEPEFV 128

Query: 82  LFFDCXXXXXXXXXXXXNQGREDDNIETIRKRFRVFLESSIPVVEYYESKGRVRKIDAGK 141
           LFFDC            NQGREDDN+ETIRKRF+VFLESS+PV+EYYESKG+VRKIDA +
Sbjct: 129 LFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVIEYYESKGKVRKIDAAQ 188

Query: 142 SVEEVFEAVKSIFTQKDEKV 161
           S+EEVFEAVK++FT  +E+V
Sbjct: 189 SIEEVFEAVKAVFTPTNEQV 208


>GSVIVT01027430001 assembled CDS
          Length = 228

 Score =  175 bits (444), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 106/134 (79%), Gaps = 2/134 (1%)

Query: 23  MIQNMIKEGKIVPSEVTIKLLQKAMRESGNDKFLIDGFPRNEENRAAFESVTK--IEPEF 80
           MIQ+  KEGKIVPSEVT+KLLQ+AM+ S N+KFLIDGFP NEENR AFE++    +EP+F
Sbjct: 84  MIQDYKKEGKIVPSEVTVKLLQQAMQGSTNNKFLIDGFPCNEENRTAFENIVGQILEPDF 143

Query: 81  VLFFDCXXXXXXXXXXXXNQGREDDNIETIRKRFRVFLESSIPVVEYYESKGRVRKIDAG 140
           VLFFDC            NQGR DDNI+ I KRF+V+ ES++PV++YY SKG+V+KIDA 
Sbjct: 144 VLFFDCSQEELTRRILNRNQGRVDDNIQAIPKRFQVYFESTLPVIDYYSSKGKVQKIDAE 203

Query: 141 KSVEEVFEAVKSIF 154
           +S+EEVFEAVKSIF
Sbjct: 204 RSIEEVFEAVKSIF 217


>GSVIVT01018596001 assembled CDS
          Length = 238

 Score =  149 bits (375), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 94/136 (69%)

Query: 20  YRTMIQNMIKEGKIVPSEVTIKLLQKAMRESGNDKFLIDGFPRNEENRAAFESVTKIEPE 79
           + +MI + I+EGKIVPSEVT+KL++K M  S N+KFLIDGFPR EENR AFE V   EP 
Sbjct: 97  HGSMILDSIREGKIVPSEVTVKLIEKEMESSKNNKFLIDGFPRTEENRIAFERVIGAEPN 156

Query: 80  FVLFFDCXXXXXXXXXXXXNQGREDDNIETIRKRFRVFLESSIPVVEYYESKGRVRKIDA 139
           FVLFF C            N+GR DDNI+TI+KR  VF    +PV++YY  KG++ KI+A
Sbjct: 157 FVLFFHCPEEEMVKRLLSRNEGRVDDNIDTIKKRLEVFTALHLPVIKYYSEKGKLYKINA 216

Query: 140 GKSVEEVFEAVKSIFT 155
             +V+E+FE V+ +F 
Sbjct: 217 VGTVDEIFEQVRPVFA 232