Jatropha Genome Database

JcCA0154181.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.30 + phase: 0 
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024746001 assembled CDS                                       114   2e-26
GSVIVT01028311001 assembled CDS                                        66   6e-12
GSVIVT01005618001 assembled CDS                                        66   9e-12

>GSVIVT01024746001 assembled CDS
          Length = 233

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query: 76  MPRHVAIIMDGNGRWARQKGGLASMGHEAGGRTLTDIVKLCWQWGIKVLTVFAFSCDNWT 135
           MP HVA+IMDGN RWA+++G  A+ GH+AG R+L ++V LC +WGIKVL+VFAFS DNW+
Sbjct: 1   MPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLSVFAFSYDNWS 60

Query: 136 RPQVEVDFLMSLFEKSLKSEINNFVR 161
           R + EV FLMSL E+ +K+E+ NF R
Sbjct: 61  RSEGEVGFLMSLIERVVKAELPNFGR 86


>GSVIVT01028311001 assembled CDS
          Length = 269

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 52/82 (63%)

Query: 76  MPRHVAIIMDGNGRWARQKGGLASMGHEAGGRTLTDIVKLCWQWGIKVLTVFAFSCDNWT 135
           +P H+A IMDGN R+A+++  +   GH+ G   L  +++  ++ G+K +T++AFS +N+ 
Sbjct: 33  IPNHIAFIMDGNRRFAKKQNLIEGAGHKVGYLALMSMLRYSYELGVKYVTIYAFSIENFK 92

Query: 136 RPQVEVDFLMSLFEKSLKSEIN 157
           R   EV  +M L ++ ++  IN
Sbjct: 93  RRPEEVQSVMDLMQEKIEQLIN 114


>GSVIVT01005618001 assembled CDS
          Length = 242

 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 49/79 (62%)

Query: 76  MPRHVAIIMDGNGRWARQKGGLASMGHEAGGRTLTDIVKLCWQWGIKVLTVFAFSCDNWT 135
           +P H+A IMDGN R+A++       G++AG   L  ++K C++ G+K + ++AFS DN+ 
Sbjct: 28  IPNHIAFIMDGNRRYAKKWKLEEGAGYKAGFLALLSMIKYCYKLGVKYIAIYAFSIDNFR 87

Query: 136 RPQVEVDFLMSLFEKSLKS 154
           R   EV ++M L  + ++ 
Sbjct: 88  RRPQEVQYVMDLMHEKIQG 106