Jatropha Genome Database

JcCA0154181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.20 - phase: 0 
         (567 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024745001 assembled CDS                                       810   0.0  
GSVIVT01001050001 assembled CDS                                        75   1e-13

>GSVIVT01024745001 assembled CDS
          Length = 559

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/454 (82%), Positives = 420/454 (92%)

Query: 68  SKKKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTITCPHRVA 127
           SKKK + PITI+L KVCKVCK+ GHEAGFKGATYIDCPMKPCFLCKMPGHTT+TCPH+VA
Sbjct: 61  SKKKERVPITIALTKVCKVCKRKGHEAGFKGATYIDCPMKPCFLCKMPGHTTMTCPHKVA 120

Query: 128 TEYGVIPAPQRNTHNPLEYVFQRQLRPHIPPIKPPFVVPDQVCCAVIRYHSRRVTCLEFH 187
           TE+GVIPAP RNT + L+YVF+RQL+P IP IK  F+VP+QV CAVIRYHSRRVTCLEFH
Sbjct: 121 TEHGVIPAPNRNTRSSLDYVFRRQLQPDIPAIKTAFIVPNQVDCAVIRYHSRRVTCLEFH 180

Query: 188 PTKNNVLLSGDKKGQVGVWDFEKVHEKMVYGNIHTCIVNNMRFKPSNDGTVYAASSDGTI 247
           PT NN+LLSGDKKGQ+GVWD+ KVHEK VYGNIH CI+NNMRFKP+ND T+YAASSDGTI
Sbjct: 181 PTNNNILLSGDKKGQLGVWDYNKVHEKTVYGNIHHCILNNMRFKPTNDETIYAASSDGTI 240

Query: 248 SCTDMETGISTSLMNLNPDGWQGPSSWRMLYGMDINSEKGVVLVADNFGFLYIVDMRSNS 307
           SCTD+ETGIS+SLMNLNP+GW+GPS+WRMLYGMDINSEKG+VLVADNFGFLY+VD RSN+
Sbjct: 241 SCTDLETGISSSLMNLNPNGWEGPSTWRMLYGMDINSEKGLVLVADNFGFLYLVDTRSNN 300

Query: 308 KTGQPILIHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWDMRRLEAGSSLCDLVHKRVV 367
           +TG+ ILIHKKGSKVVGLHCNP+ PELLLSCGNDHFARIWDMRRLEAGSSL +L H RVV
Sbjct: 301 QTGEAILIHKKGSKVVGLHCNPLQPELLLSCGNDHFARIWDMRRLEAGSSLHNLPHGRVV 360

Query: 368 NCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 427
           N AYFSP SG KILTTSQDNR+RVWDSIFGNL+SPSREIVHSHDFNRHLTPFRAEWDPKD
Sbjct: 361 NAAYFSPQSGCKILTTSQDNRIRVWDSIFGNLNSPSREIVHSHDFNRHLTPFRAEWDPKD 420

Query: 428 PSESLAVIGRYISENYNGAALHPIDFIDTSNGQLVAEVMDPNITTITPVNKLHPRDDILA 487
           P+ESL V+GRYISENYNGAALHPIDFID S GQLVAEVMDPNITTI+PVNKLHPRDD+LA
Sbjct: 421 PAESLVVVGRYISENYNGAALHPIDFIDISTGQLVAEVMDPNITTISPVNKLHPRDDVLA 480

Query: 488 SGSSRSLFIWKPKDKSELAEQKEDRQIVICGNAE 521
           SGSSRSLFIW+P+DKSE  +QK +++IV+C + +
Sbjct: 481 SGSSRSLFIWRPRDKSEPVQQKNEKKIVLCASEK 514


>GSVIVT01001050001 assembled CDS
          Length = 450

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 48/340 (14%)

Query: 173 VIRYHSRRVTCLEFHP-TKNNVLLSGDKKGQVGVWDF--EKVHEKMVYGNIHTCIVNNMR 229
           + R    R+  L F P   + ++++GDK G +G WD   EK  + +     H   V+ + 
Sbjct: 143 IARIMPGRIMNLRFFPCIDSTMIVAGDKSGHIGFWDVDCEKERDGVFLYQPHKDPVSGIL 202

Query: 230 FKPSNDGTVYAASSDGTISCTDMETGI-------STSLMNLNPDGWQGPSSWRMLYGMDI 282
            +  +   ++ +   G+I   D E  +        +++ +L+    Q P+    LY    
Sbjct: 203 IQEFSQSKIFTSCYGGSIQLMDAEKEVFDKIYSSESAIFSLS----QRPNYVNCLY---- 254

Query: 283 NSEKGVVLVADNFGFLYIVDMRSNSKTGQPILIHKKGSKVVGLHCNPVHPELLLSCGNDH 342
                     +  G L + DMR+  +      +H+     +  + N  +P ++ +  +D 
Sbjct: 255 --------FGEGNGGLNLWDMRAGKEPSSSWPLHEYRINTIDFNIN--NPNIMATSSSDA 304

Query: 343 FARIWDMRRLEAG--SSLCDLVHKRVVNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLD 400
            A IWD+R++++    +L  + H R V+ AYFSP SGS + TTS +N++ +   +  N +
Sbjct: 305 TACIWDLRKIDSDKPKTLKTVSHARAVHSAYFSP-SGSSLATTSVENKVGLLGGV--NFE 361

Query: 401 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDTSNGQ 460
             S  I H +   R ++ FRA W   D            S  + G     +D I T+  +
Sbjct: 362 DLSM-IYHENHMCRWISSFRAIWGWDD------------SYLFIGNMKRGVDIISTACRK 408

Query: 461 LVAEVMDPNITTITPVNKLHPRDDILASGSS--RSLFIWK 498
            V  +   +++ I      HP    + +G++    +++WK
Sbjct: 409 TVMTLQSAHMSAIPCRFSAHPYKVGMLAGATGGGQIYMWK 448