Jatropha Genome Database

JcCA0154181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.10 - phase: 0 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024743001 assembled CDS                                        84   2e-17

>GSVIVT01024743001 assembled CDS
          Length = 1483

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)

Query: 20 ESFARPSNADSVREDEAELQWQAIARLPSQKRSNFSLLRRSSTDYSHGGEESRMEMIDVT 79
          +SF+R S  + V  DE EL W+AI RLPSQKR+NF+L++RS+   S    E R + IDV 
Sbjct: 6  DSFSR-SRREEVEADEDELMWEAILRLPSQKRTNFALMKRSA---SEAEGEQRTDTIDVR 61

Query: 80 KLDRANRELVVRKALAT 96
          KLDR NR+LVV+KA AT
Sbjct: 62 KLDRLNRQLVVKKAFAT 78