Jatropha Genome Database

JcCA0154091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154091.30 + phase: 0 
         (196 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010836001 assembled CDS                                        67   7e-12
GSVIVT01032683001 assembled CDS                                        60   8e-10
GSVIVT01024562001 assembled CDS                                        47   4e-06

>GSVIVT01010836001 assembled CDS
          Length = 354

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 36/159 (22%)

Query: 33  GHRRAHSEVHFRLQEDLDLVTD--PFEGPSGSSFDELGSEDDLFCTYMDIEKLGSRPE-- 88
           GHRRAHSE+   L +DL   +D     G  G SF +  +E+DLF  Y+D++KL S     
Sbjct: 10  GHRRAHSEI-LTLPDDLSFDSDLGVVGGADGPSFSD-ETEEDLFSMYLDMDKLNSSSATS 67

Query: 89  -----EGPSGLKLDNAVNGLTDXXXXXXXXXXXXXXDADEEKNVRPRHRYSNSVDGSSFL 143
                E  S   L +A   +T+                    + R RH++S S+DGS+ +
Sbjct: 68  SFQMGEPSSAAPLGSASAAMTENVVA-------------RPNDRRVRHQHSQSMDGSTSI 114

Query: 144 E------------SIEAKKAMAPDKLAELWTLDPKRAKR 170
           +            + ++KKAM+  KLAEL  +DPKRAKR
Sbjct: 115 KPEMLMSGSDENSAADSKKAMSAAKLAELALIDPKRAKR 153


>GSVIVT01032683001 assembled CDS
          Length = 198

 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 30/31 (96%)

Query: 140 SSFLESIEAKKAMAPDKLAELWTLDPKRAKR 170
           S F+++IEAKKAMAPDKLAELWTLDPKRAKR
Sbjct: 6   SLFVDTIEAKKAMAPDKLAELWTLDPKRAKR 36


>GSVIVT01024562001 assembled CDS
          Length = 219

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 23/25 (92%)

Query: 146 IEAKKAMAPDKLAELWTLDPKRAKR 170
           ++AKKAM PDKLAELW +DPKRAKR
Sbjct: 1   MDAKKAMPPDKLAELWNIDPKRAKR 25