Jatropha Genome Database

JcCA0154091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154091.10 + phase: 2 /partial
         (138 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032685001 assembled CDS                                       208   7e-55

>GSVIVT01032685001 assembled CDS
          Length = 218

 Score =  208 bits (529), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 112/138 (81%)

Query: 1   DDFFEALIAAPVEKFLRVVVIKEIKGSQYGVQLESAVRDRXXXXXXXXXXXXXXXXXXXX 60
           DDFFEALI+AP EKFLR+VVIKEIKGSQYGVQLESAVRDR                    
Sbjct: 81  DDFFEALISAPGEKFLRIVVIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEEALEKVVE 140

Query: 61  FFQSKYFKKDSIITFHFPATSPTAEIAFSTEGKEESKLKVENANVVEMIKKWYLGGTRGV 120
           FFQSKYFKKDSIITFHFPATS TAEI F+TEGKEESK+ VENANVVEMIKKWYLGGTRGV
Sbjct: 141 FFQSKYFKKDSIITFHFPATSCTAEIVFATEGKEESKITVENANVVEMIKKWYLGGTRGV 200

Query: 121 SATTITSLANTLSAELSK 138
           S TTI++LANTL+ ELSK
Sbjct: 201 SPTTISALANTLATELSK 218