Jatropha Genome Database

JcCA0154071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154071.20 - phase: 0 
         (189 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010994001 assembled CDS                                       100   3e-22

>GSVIVT01010994001 assembled CDS
          Length = 174

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 56/70 (80%)

Query: 30 MMRLGGPALSLEAFANAKSTRNKYNPALIKKQREFYKNAKYVSKFKKKLRQQNQQTETSS 89
          M RLGG  LSLEAFANAKST N YNPALIKKQ+EFYKNAKYVSK+KK L+QQ +Q + SS
Sbjct: 1  MRRLGGGGLSLEAFANAKSTTNNYNPALIKKQKEFYKNAKYVSKYKKSLKQQGKQNDISS 60

Query: 90 VVTNLEDNNE 99
           +   +D NE
Sbjct: 61 AIRQPQDENE 70