Jatropha Genome Database

JcCA0154071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154071.10 + phase: 2 /partial
         (141 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010995001 assembled CDS                                       254   8e-69
GSVIVT01021910001 assembled CDS                                       249   3e-67
GSVIVT01033011001 assembled CDS                                       170   2e-43
GSVIVT01003183001 assembled CDS                                       160   1e-40
GSVIVT01009126001 assembled CDS                                       122   7e-29
GSVIVT01016368001 assembled CDS                                        84   2e-17

>GSVIVT01010995001 assembled CDS
          Length = 466

 Score =  254 bits (650), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/136 (88%), Positives = 128/136 (94%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           DRVFEYIGT+AKKLEMLSVAFAGD DLGLHHV+SGC++LRKLEIRDCPFGDKALLANAAK
Sbjct: 331 DRVFEYIGTHAKKLEMLSVAFAGDGDLGLHHVLSGCKSLRKLEIRDCPFGDKALLANAAK 390

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
           LETMRSLWMSSCSVS+GACKLLGQKMPRLNVEV+DERG PDSRPESC VEKLYIYR+VAG
Sbjct: 391 LETMRSLWMSSCSVSFGACKLLGQKMPRLNVEVMDERGRPDSRPESCSVEKLYIYRSVAG 450

Query: 121 PRFDMPGFVWTMDEDS 136
           PR DMP FVWTM   S
Sbjct: 451 PRSDMPRFVWTMKTPS 466


>GSVIVT01021910001 assembled CDS
          Length = 471

 Score =  249 bits (635), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 130/141 (92%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           DRVFEYIG++ KKLEMLS+AFAGDSDLGLHHV+SGC++LRKLEIRDCPFGDKALLANAAK
Sbjct: 331 DRVFEYIGSHGKKLEMLSLAFAGDSDLGLHHVLSGCKSLRKLEIRDCPFGDKALLANAAK 390

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
           LETMRSLWMS+C VSY ACKLLGQKMPRLNVEVI E+G PDS P+  PVEKLYIYRTV+G
Sbjct: 391 LETMRSLWMSACQVSYRACKLLGQKMPRLNVEVIAEQGHPDSSPDEYPVEKLYIYRTVSG 450

Query: 121 PRFDMPGFVWTMDEDSALRLS 141
           PR DMP FVWTMD++SALR S
Sbjct: 451 PRSDMPSFVWTMDKNSALRSS 471


>GSVIVT01033011001 assembled CDS
          Length = 534

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 104/136 (76%), Gaps = 7/136 (5%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+VF YIG YA++LEMLS+AFAGDSD G+ +V++GC+ LRKLEIRDCPFG+ ALL +  K
Sbjct: 331 DQVFLYIGMYAEQLEMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDCPFGNVALLTDVGK 390

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPP----DSRPESCPVEKLYIYR 116
            ETMRSLWMSSC V+ G CK+L +KMPR+NVE+I+E        D R +   V+K+++YR
Sbjct: 391 YETMRSLWMSSCEVTLGGCKVLAEKMPRINVEIINEYDQMEFGFDDRQK---VDKMFLYR 447

Query: 117 TVAGPRFDMPGFVWTM 132
           T+ GPR D P FVWT 
Sbjct: 448 TLVGPRKDAPHFVWTF 463


>GSVIVT01003183001 assembled CDS
          Length = 553

 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 98/132 (74%), Gaps = 5/132 (3%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D  FEYIG YAK LE LSVAFAG SD G+  V+SGC  LRKLEIRDCPFG++ALL+   K
Sbjct: 427 DLTFEYIGKYAKNLETLSVAFAGSSDWGMQCVLSGCSKLRKLEIRDCPFGNEALLSGLEK 486

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
            E+MRSLWMS+C+V+  AC+ L ++MPRLNVEV+ +    DS+      +K+Y+YR+VAG
Sbjct: 487 YESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKDEESDDSQ-----ADKVYVYRSVAG 541

Query: 121 PRFDMPGFVWTM 132
           PR D P FV T+
Sbjct: 542 PRRDAPPFVLTL 553


>GSVIVT01009126001 assembled CDS
          Length = 552

 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 78/129 (60%), Gaps = 4/129 (3%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+ F YIG Y K +  LSVAFAGDSD+GL +V+ GC  L+KLEIRD PFGD AL +    
Sbjct: 425 DKAFSYIGKYGKLVRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHH 484

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
              MR LWMSSC +S   C+ + + MP L VEVI      D        E LY+YR++  
Sbjct: 485 YYNMRFLWMSSCRLSRQGCEEIARAMPGLVVEVIRNENEEDKD----GFEILYMYRSLER 540

Query: 121 PRFDMPGFV 129
           PR D P FV
Sbjct: 541 PRIDAPEFV 549


>GSVIVT01016368001 assembled CDS
          Length = 598

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 4   FEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAKLET 63
             YIG Y+  +  + + + G+SD GL     GC +L+KLE+R C F ++AL   A +L +
Sbjct: 457 LNYIGQYSPNVRWMLLGYVGESDAGLLEFSRGCPSLQKLEMRGCCFSERALAVAAMQLTS 516

Query: 64  MRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVE-----KLYIYRTV 118
           +R LW+     S     LL    P  N+E+I  RG   + P+  PV       +  Y ++
Sbjct: 517 LRYLWVQGYRASETGRDLLVMARPFWNIELIPSRGVTINAPDREPVSIEHPAHILAYYSL 576

Query: 119 AGPRFDMPGFVWTMDEDSALRL 140
           AGPR D P  V  +D  S L L
Sbjct: 577 AGPRTDFPSTVTPLDPASFLTL 598