Jatropha Genome Database

JcCA0153841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153841.20 + phase: 0 
         (313 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031692001 assembled CDS                                        87   1e-17
GSVIVT01013538001 assembled CDS                                        86   3e-17
GSVIVT01026027001 assembled CDS                                        85   5e-17
GSVIVT01026026001 assembled CDS                                        82   2e-16
GSVIVT01013506001 assembled CDS                                        80   2e-15
GSVIVT01030585001 assembled CDS                                        67   1e-11
GSVIVT01031694001 assembled CDS                                        49   2e-06

>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 131/320 (40%), Gaps = 70/320 (21%)

Query: 6   PEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGDLSKFVC------- 58
           P  I+ +ILL+  VKSL+R                F+KSHL   Q       C       
Sbjct: 5   PLHIIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHLRLPQTQARTQFCTLNYGEP 64

Query: 59  GSNFYDV------------NNSGEAVPVESPLEQQLPFLNG--ENCTILCSSDGLVLLRI 104
           G N+Y V            +++G A+  +   +     + G      +L S DGL+ L  
Sbjct: 65  GDNYYLVVGASTKDCEAFSDDNGGALAFDYLFD-----IGGFKYEVVLLDSCDGLLCL-- 117

Query: 105 SIDKLNHRKTKAKARAEAYSLVLWNPSTRQ-REVLPNPKTFAPYNTFISYGLGYDSATNC 163
            +D  N              +VLWNPSTRQ  ++ PNP      +    +G GYDS  + 
Sbjct: 118 -VDLAN-------------KIVLWNPSTRQCNQLPPNPNVL---DFLGCHGFGYDSFADD 160

Query: 164 YKVVQCGYYR------ILVFSLESYSWRKPKDFGFDITFSQAGTLTHGAFHWVA-ELDNS 216
           YKV             + VFSL+S  W++ ++           T+ HGA HWVA +    
Sbjct: 161 YKVFLVSMLNPNFETVVDVFSLKSNKWKRIQEKHHTRAARMCATVLHGALHWVAYDPILG 220

Query: 217 SKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLESIRNICNGGNSPG 276
              ++AF+   E+  ++ +P              ++ V+ G LC+        +G   P 
Sbjct: 221 FDTIMAFDFEKERFREMAIP------REEEELYVKLRVVGGCLCV--------HGSKDPS 266

Query: 277 AYLNIWVMKEYGVTESWNKF 296
               +WVMKEYGV  SW+K 
Sbjct: 267 ---KMWVMKEYGVDTSWSKM 283


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 133/303 (43%), Gaps = 50/303 (16%)

Query: 6   PEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGDLSKFVCGSNF-YD 64
           PE I+ DIL +  VKSLLRF               F+++HL +      + V G    + 
Sbjct: 5   PEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHLRQQH---KRPVIGLVVPHS 61

Query: 65  VNNSGEAVPVESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKAKARAEAYS 124
           V++      +   LE  L   N    T+L S +GL+ +          K   K       
Sbjct: 62  VDDPLHKDDLAVDLELHLGIPNKRTTTVLDSCNGLLCVVDCYYGFYSLKPPQK------- 114

Query: 125 LVLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSATNCYKVVQCGYY------RILVFS 178
           L+LWNPSTRQ   +P P +F  Y   + Y   YD  ++ YK+V+   +       I +F+
Sbjct: 115 LILWNPSTRQCNHIPCP-SFVGYQNCM-YSFFYDPGSDDYKIVRIFTFLGKDKTGIDIFT 172

Query: 179 LESYSWRKPKDFGFDITFSQAGTLTHGAFHWVA-------ELDNSSKIVVAFNLSDEKIV 231
           L++  WR+ ++    +    + T  +G  HW+A       E + SS  +VAF+L +EK  
Sbjct: 173 LKTNKWRRVEETHSSVIGYWSATYFNGNLHWLAFRYGGYGEDERSS--MVAFSLREEKFQ 230

Query: 232 QLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLESIRNICNGGNSPGAYLN-IWVMKEYGVT 290
           +++LP               + VL G LC+              G Y N  WVM+EYG+ 
Sbjct: 231 EMELPSQRAVFG--------LRVLGGCLCV-------------DGLYTNDKWVMEEYGIK 269

Query: 291 ESW 293
           ESW
Sbjct: 270 ESW 272


>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 123/301 (40%), Gaps = 54/301 (17%)

Query: 6   PEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGDLSKFVCGSNFYDV 65
           P+EI+ +IL    VKSL+RF              DF K  L  +  D             
Sbjct: 27  PDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARD------------- 73

Query: 66  NNSGEAVPVESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKAKARAEAYSL 125
             SGE     S L    P +  ++C + C     +        +NH   +         +
Sbjct: 74  --SGEVY--NSRLIMHYPSMKLKSCPLSC-----LFYEPVGHSVNHEYPENDI------I 118

Query: 126 VLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSATNCYKVVQCGYY--------RILVF 177
            +WNPSTR+   LP P +F      ++YG GYDS  + YKV + G Y        ++ VF
Sbjct: 119 FVWNPSTREFRRLP-PISFMQCFHLVAYGFGYDSIADDYKVTRVGCYCIGRYYEYQVRVF 177

Query: 178 SLESYSWRKPKDFGFDITFSQAGTLTHGA--FHWVAELDNSSKIVVAFNLSDEKIVQLQL 235
           SL    WRK ++F   +   + G   +G+  F  V + +N    VV  +L+ E    + L
Sbjct: 178 SLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDSENYYWSVVGLDLASESYRMVPL 237

Query: 236 PXXXXXXXXXXXXXXEVIVLQGNLCLLESIRNICNGGNSPGAYLNIWVMKEYGVTESWNK 295
           P               ++ L G  C       I +   +    +++WVM++YGV +SWNK
Sbjct: 238 PDCADPNVKPM-----IMALGGRFC------TIFDNDEA----VDVWVMEQYGVKKSWNK 282

Query: 296 F 296
            
Sbjct: 283 L 283


>GSVIVT01026026001 assembled CDS
          Length = 243

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 26/185 (14%)

Query: 121 EAYSLVLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSATNCYKVVQ---CGY-----Y 172
           E  ++ +WNPS ++ + LP+ K F      +SY  GYDS T+ YKVV+   C       Y
Sbjct: 2   EKDTIFVWNPSIKESKRLPS-KPFEQLFYLVSYAFGYDSITDDYKVVRLVCCSINDSYEY 60

Query: 173 RILVFSLESYSWRKPKDFGFDITFSQAGTLTHGAFHWVAELD--NSSKIVVAFNLSDEKI 230
            + VFSL S +WRK + F + +   +AG   +G+ +W    D  N    + + +L+ E  
Sbjct: 61  HVEVFSLRSNAWRKIRSFPYFLFTDEAGKHVNGSINWAVSRDKNNDHWFIASLDLATESY 120

Query: 231 VQLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLESIRNICNGGNSPGAYLNIWVMKEYGVT 290
             +  P               + VL G  C++    +I          +++WVM+EYGV 
Sbjct: 121 EVVPQPDCANETLKPI-----IRVLGGQFCIIFEYDDI----------IDVWVMQEYGVK 165

Query: 291 ESWNK 295
           ESW+K
Sbjct: 166 ESWSK 170


>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 143/331 (43%), Gaps = 54/331 (16%)

Query: 8   EIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGD-----LSKFVCGS-- 60
           E + DI L+  VKS++RF              DFI  HL ++  +     L K +  S  
Sbjct: 23  ENLIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKHLSSSEQ 82

Query: 61  NFYDVNNS---GEAVPVESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKAK 117
             Y + ++    E   +E P+  +  +       I+ SS+GL+ L          ++  K
Sbjct: 83  EIYSLRSNIAFAEVRRLEVPVPSKTDYYQ-----IVGSSNGLICL---------TESNFK 128

Query: 118 ARAEAYSLVLWNPSTRQREVLP--NPKTFAPYNTFISYGLGYDSATNCYKVVQCGYY--- 172
               + +L LWNP+ R+ + LP  +   F      +  G  +    N YKVV+  Y+   
Sbjct: 129 GSYLSLNLFLWNPAIREFQTLPKYHINNFTSPLMVVGLGFAFHPVINDYKVVRIVYFMRN 188

Query: 173 ---RILVFSLESYSWRK-PKDFGFDITFSQAGTLTHGAFHWVA----ELDNSSKIVVAFN 224
                 V+SL + SWRK   +    I  + + T  +GA HW+A    E+DN+  ++++F+
Sbjct: 189 KTSEADVYSLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFD 248

Query: 225 LSDEKIVQLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLE---SIRNICNGGNSPGAYLNI 281
           ++ +   ++ LP              E+I      CL +   S+  +           ++
Sbjct: 249 MAKDVFKEIMLP---------DFGYDELI----RKCLADYKGSLSVLFYDAYHSNENCDV 295

Query: 282 WVMKEYGVTESWNK-FDNHHTRESILSFSTF 311
           WVM+EYGV +SW K F   H  E I+ F  F
Sbjct: 296 WVMEEYGVAKSWTKHFTIRHEIEIIIPFEFF 326


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 126/321 (39%), Gaps = 63/321 (19%)

Query: 8   EIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHR----------------SQG 51
           E + D+LL+  VKS++RF              DFI  +L R                S+ 
Sbjct: 24  ENLVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCMLLKYLSSSEE 83

Query: 52  DLSKFVCGSNFYDVNNSGEAVPVESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNH 111
           ++    C  +F +       VP ++               I+ SS+GL+ L         
Sbjct: 84  EVYSLRCDKDFAEFRRLQVPVPSKTDYYH-----------IVGSSNGLICLT-------- 124

Query: 112 RKTKAKARAEAYSLVLWNPS-TRQREVLP----NPKTFAPYNTFISYGLGYDSATNCYKV 166
            ++  K         LWNPS T Q + LP    N    +P+   +  G  +    + YKV
Sbjct: 125 -ESNNKGSYVTVDTFLWNPSVTAQWKPLPKYLINNMMTSPF-MVVGLGFAFHPQIDDYKV 182

Query: 167 VQCGY------YRILVFSLESYSWRK-PKDFGFDITFSQAGTLTHGAFHWVAELDN---- 215
           V+  Y      Y + V+SL+  +W+         I  + + T  +GA HW+A   N    
Sbjct: 183 VRIVYFLKSKTYEVHVYSLKQDAWKNIDAKVHCHIHDTVSRTFVNGALHWLAAKKNQGRG 242

Query: 216 -SSKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLESIRNICNGGNS 274
            S  ++++F++ ++ + ++ LP              +    +G L +L    + CN    
Sbjct: 243 KSDDLILSFDMVEDNLREMILPEFGYDESSTQKCLAD---YKGLLSVLVYNAHRCNDN-- 297

Query: 275 PGAYLNIWVMKEYGVTESWNK 295
                +IWVM EYGV  SW K
Sbjct: 298 ----CDIWVMDEYGVASSWTK 314


>GSVIVT01031694001 assembled CDS
          Length = 184

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 26/173 (15%)

Query: 6   PEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGDLSKFVCGSNFYDV 65
           P  I+ +ILL+  VKSL+RF               F++SH    Q      +C  ++ + 
Sbjct: 5   PLHIIENILLRLPVKSLIRFRCVCKAWRTLISHPHFVRSHFRLPQTQARTRLCIIDYSER 64

Query: 66  NNSGEAVPVESPLEQQLPFLNGENCTILCSSDGLVL---LRISIDKLNHRKTKAKA---- 118
            ++   V   S           ++C     +DG  L       I K  H      +    
Sbjct: 65  GDNHSMVVRAS----------TKDCEAFSDNDGGSLAFDYLFDIGKFKHEVVLLDSCDGL 114

Query: 119 ---RAEAYSLVLWNPSTRQ-REVLPNPKTFAPYNTFIS-YGLGYDSATNCYKV 166
                 A  +VLWNPSTRQ  ++ PNP        F+  +G GYDS+ + YK+
Sbjct: 115 LCIADLANKIVLWNPSTRQFNQLPPNPNVV----DFVGCHGFGYDSSADDYKI 163