Jatropha Genome Database

JcCA0153841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153841.10 + phase: 0 
         (225 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037910001 assembled CDS                                       352   7e-98
GSVIVT01037911001 assembled CDS                                       196   5e-51
GSVIVT01020876001 assembled CDS                                        65   4e-11

>GSVIVT01037910001 assembled CDS
          Length = 226

 Score =  352 bits (903), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 189/218 (86%)

Query: 7   LLSLLVTLATIQGNHAVDYTVTNTATSTAGGARFTTDIGEDYAKKTLSAATDFIWRVFQQ 66
           LLS  V LA   G  AV+Y VTN A S+AGG RFT +IG  Y+++TL +ATDFIW VFQQ
Sbjct: 8   LLSCFVFLADQHGIQAVEYEVTNNAGSSAGGVRFTNEIGIPYSRQTLVSATDFIWGVFQQ 67

Query: 67  VNAEDRKDVQQVSLFIDDMDGVAYASNNEIHVSANYIGNYSGDLVREFSGVIYHEMTHIW 126
              E+RK VQ+VSL I++MDGVAYASNNEIHV+ANYIG+YSGD+  EF+GV+YHEMTHIW
Sbjct: 68  NTPEERKTVQKVSLIIENMDGVAYASNNEIHVNANYIGSYSGDVKTEFTGVLYHEMTHIW 127

Query: 127 QWNGNGQTPVGLIEGIADFVRLKANYAPSHWVQPGQGDKWDQGYDVTARFLDYCNDLRNG 186
           QWNGNGQTP GLIEGIAD+VRLKANYAPSHWVQPGQG++WDQGYDVTARFLDYCN LRNG
Sbjct: 128 QWNGNGQTPGGLIEGIADYVRLKANYAPSHWVQPGQGNRWDQGYDVTARFLDYCNSLRNG 187

Query: 187 FVAELNKKMRTGYSNQYFVDLLGKSVDQLWSDYKAKYA 224
           FVAELNKKMR+GYS  +FV+LLGK+VDQLW+DYKAKY 
Sbjct: 188 FVAELNKKMRSGYSADFFVELLGKTVDQLWTDYKAKYG 225


>GSVIVT01037911001 assembled CDS
          Length = 104

 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 89/103 (86%), Positives = 95/103 (92%)

Query: 122 MTHIWQWNGNGQTPVGLIEGIADFVRLKANYAPSHWVQPGQGDKWDQGYDVTARFLDYCN 181
           MTHIWQWNGNGQ P GLIEGIADFVRLKANYAPSHWVQPGQGD+WDQGYDVTARFLDYCN
Sbjct: 1   MTHIWQWNGNGQAPGGLIEGIADFVRLKANYAPSHWVQPGQGDRWDQGYDVTARFLDYCN 60

Query: 182 DLRNGFVAELNKKMRTGYSNQYFVDLLGKSVDQLWSDYKAKYA 224
            LRNGFVAELNKKMR+GYS  +FV+LL  +VDQLW+DYKAKY 
Sbjct: 61  SLRNGFVAELNKKMRSGYSADFFVELLRNNVDQLWTDYKAKYG 103


>GSVIVT01020876001 assembled CDS
          Length = 312

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 30/238 (12%)

Query: 6   FLLSLLVTLATIQGNHAVDYTVTNTATSTAGGARFTTD-IGEDYAKKTLSAATDFIWRV- 63
           F + ++   A  + +     T+ N A  TA G +F    +  D A + +   ++F+ +V 
Sbjct: 23  FFIGIVTIWANCEASKGFSITIINDAGDTAAGRKFDLFYVSNDKATRMVLNTSEFVEKVL 82

Query: 64  FQQVNAEDRKDVQQVSLFIDDMDGVAYASNNEIH---VSANYIGNYSGDLVRE------- 113
           +   N   +KDV  V         V  AS N  H   VS+     ++ D+          
Sbjct: 83  YDPSNTHPKKDVNHVI--------VRLASRNLTHMVIVSSRERNEFALDISPSVMQGTHV 134

Query: 114 ---FSGVIYHEMTHIWQWNGNGQTPVGLIEGIADFVRLKANYAPSHWVQ-----PGQGDK 165
               +  +   M  IW W+G    P  L+EG+ +++ + A ++P+  +       G G+ 
Sbjct: 135 GYAMASALQRGMARIWLWDGEDSAPPALLEGMVEYITILAGFSPAPTMPNSVDLSGSGNF 194

Query: 166 WDQGYD--VTARFLDYCNDLRNGFVAELNKKMRTGYSNQYFVDLLGKSVDQLWSDYKA 221
                D    A FL+YC     GF+  LN+ M   +        LG  V  L + Y +
Sbjct: 195 CWMNKDPIAVAHFLNYCEAQNRGFIQRLNQAMEHQWHEGALEAALGFPVQDLCASYNS 252