Jatropha Genome Database

JcCA0153811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153811.20 + phase: 0 /partial
         (245 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032902001 assembled CDS                                       310   5e-85

>GSVIVT01032902001 assembled CDS
          Length = 659

 Score =  310 bits (793), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/248 (67%), Positives = 190/248 (76%), Gaps = 15/248 (6%)

Query: 1   MTEESGTRVSSDNPTANTDASQSRQRKRRKWDQPAESLVSAG--LSGVVPLGNIGTLAGI 58
           M E+S  R     P ++ +AS  RQRK+RKWDQPAESLVSAG  L GV+PLGN+G L GI
Sbjct: 47  MIEDSCPR-----PASSDEASAIRQRKKRKWDQPAESLVSAGVALPGVLPLGNVGPLVGI 101

Query: 59  SLPGLASVSGAYLTNQLVASCATVPPVFQVPSAPLNNGVVVSRPNQPKIQDELIIAREIV 118
            L G+A  S A LTN       T+PPVFQ  S   +   +V + NQPKIQDELI AREI+
Sbjct: 102 PLAGVAPPSSALLTN------VTIPPVFQTSSIQQHASAIVQKLNQPKIQDELI-AREII 154

Query: 119 INDAESSVRYKLTKRQTQEEIQKCTGAVVITRGKYRPLNTPPDGEKPLYLHISSGAHLKD 178
           INDAES+VRYKLTKRQ QEEIQKCTGAVVITRGKYRP N  PDGEKPLYLHIS+GAHLKD
Sbjct: 155 INDAESTVRYKLTKRQMQEEIQKCTGAVVITRGKYRPPNALPDGEKPLYLHISAGAHLKD 214

Query: 179 TAERILAVDRAAAMIEEMLKQSPNLQSAPSIFPIAGGSGL-KALSTCVFLGFDADSSLNI 237
           TAERI AVDRAAAM+EEMLKQ  N +S PS   +AG +G+ +A STCVFLGF+AD SLNI
Sbjct: 215 TAERIKAVDRAAAMVEEMLKQGQNSESVPSNSHLAGNTGVTQAPSTCVFLGFEADPSLNI 274

Query: 238 AARIRGPN 245
           AA IRGPN
Sbjct: 275 AACIRGPN 282