Jatropha Genome Database

JcCA0153811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153811.10 - phase: 0 
         (120 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032919001 assembled CDS                                       156   2e-39
GSVIVT01012213001 assembled CDS                                       122   3e-29

>GSVIVT01032919001 assembled CDS
          Length = 203

 Score =  156 bits (394), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 81/89 (91%)

Query: 19  LQVGFPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLG 78
           +Q+G  G CIMSSCVKP+I+S ++PVVLLHCFDSSCLEWRCTYPLLE+AGLEAWAVDVLG
Sbjct: 70  VQIGSSGSCIMSSCVKPVIRSNSNPVVLLHCFDSSCLEWRCTYPLLEEAGLEAWAVDVLG 129

Query: 79  WGFSDLEMRPPCDVASKRYHLYQVTPSYI 107
           WGFSDLE  PPCDVASKR+HLYQ+  S+I
Sbjct: 130 WGFSDLERLPPCDVASKRHHLYQLWKSHI 158


>GSVIVT01012213001 assembled CDS
          Length = 340

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 63/76 (82%)

Query: 32  CVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGWGFSDLEMRPPCD 91
           CVKPL  S+ SPVVLLH FDSSCLEWR TYPLLE+AGLE WAVD+LGWGFSDLE  P CD
Sbjct: 73  CVKPLSPSKTSPVVLLHGFDSSCLEWRYTYPLLEEAGLETWAVDILGWGFSDLERLPSCD 132

Query: 92  VASKRYHLYQVTPSYI 107
           VA+KR H YQ+  S+I
Sbjct: 133 VATKRDHFYQLWKSHI 148