Jatropha Genome Database

JcCA0153671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153671.20 - phase: 0 
         (279 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037441001 assembled CDS                                       512   e-146
GSVIVT01029937001 assembled CDS                                       439   e-123
GSVIVT01027210001 assembled CDS                                       430   e-121
GSVIVT01015504001 assembled CDS                                       227   6e-60
GSVIVT01008935001 assembled CDS                                        72   2e-13

>GSVIVT01037441001 assembled CDS
          Length = 278

 Score =  512 bits (1319), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/279 (86%), Positives = 258/279 (92%), Gaps = 1/279 (0%)

Query: 1   MESLHSHKAEMISIAVALFAIGAGTAYYLYITSKKPKGCLDPQNFKEFKLVKRTQLSHNV 60
           ME LHSH+ E++SIAVAL AIGAGTAYY Y   KKPKGCLDP+NFKEFKL+KRTQLSHNV
Sbjct: 1   MELLHSHRVEVLSIAVALAAIGAGTAYYFYFI-KKPKGCLDPENFKEFKLIKRTQLSHNV 59

Query: 61  AKFKFALPTPTSVLGLPIGQHMSCRGKDSLGEEVAKPYTPTTLDSDLGYFELVIKMYPQG 120
           AKF FALPTPTSVLGLPIGQHMSC+GKDSLGE+V KPYTPTTLDSDLGYFELVIKMYPQG
Sbjct: 60  AKFIFALPTPTSVLGLPIGQHMSCKGKDSLGEDVVKPYTPTTLDSDLGYFELVIKMYPQG 119

Query: 121 RMSHHFREMREGDYLAVKGPKGRFKYQPNQVRVFGMLAGGTGITPMFQVTRAILENPNDK 180
           RMSHHFREM EGDYLAVKGPKGRFKYQP QV  FGMLAGGTGITPMFQVTRAILENP+D 
Sbjct: 120 RMSHHFREMCEGDYLAVKGPKGRFKYQPGQVIAFGMLAGGTGITPMFQVTRAILENPSDN 179

Query: 181 TNIHLIYANVTYEDILLKEELDNLANNFPNRFSVYYVLNQPPEGWDGGIGFVSKEMIEKH 240
           T +HLIYANVTYEDILLKEELDN A NFPNRF+VYYVLNQPPEGW+GG+GFVSKEMI+ H
Sbjct: 180 TKVHLIYANVTYEDILLKEELDNFAANFPNRFTVYYVLNQPPEGWNGGVGFVSKEMIQTH 239

Query: 241 CPAPAPDVQILRCGPPPMNKAMAAHLEALGYTSQMQFQF 279
           CP PA ++QILRCGPPPMNKAMA HLEALGYTSQMQF+F
Sbjct: 240 CPPPATNIQILRCGPPPMNKAMAGHLEALGYTSQMQFKF 278


>GSVIVT01029937001 assembled CDS
          Length = 277

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 201/252 (79%), Positives = 228/252 (90%), Gaps = 1/252 (0%)

Query: 28  YLYITSKKPKGCLDPQNFKEFKLVKRTQLSHNVAKFKFALPTPTSVLGLPIGQHMSCRGK 87
           Y Y +++KPKGCLDP+NFK+FKLVKRTQLSHNVAKF+F LPTPTSVLGLPIGQH+SC+GK
Sbjct: 27  YFY-STRKPKGCLDPENFKQFKLVKRTQLSHNVAKFRFDLPTPTSVLGLPIGQHISCKGK 85

Query: 88  DSLGEEVAKPYTPTTLDSDLGYFELVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYQ 147
           D  G+E+ KPYTPTTLDSD+GYFELVIKMYPQGRMSHHFREMR GDYLAVKGPKGRF+YQ
Sbjct: 86  DGEGQEIIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQ 145

Query: 148 PNQVRVFGMLAGGTGITPMFQVTRAILENPNDKTNIHLIYANVTYEDILLKEELDNLANN 207
             QVR FGMLAGG+GITPMFQV RAILENP DKT +HLIYANVT+EDILLKEEL+ L+ +
Sbjct: 146 VGQVRAFGMLAGGSGITPMFQVARAILENPKDKTKVHLIYANVTFEDILLKEELEGLSAS 205

Query: 208 FPNRFSVYYVLNQPPEGWDGGIGFVSKEMIEKHCPAPAPDVQILRCGPPPMNKAMAAHLE 267
           +P+ F VYYVLNQPPE W+GG+GFVSKEMI+ HCPAPA D++ILRCGPPPMNKAMAA L 
Sbjct: 206 YPDHFKVYYVLNQPPEAWNGGVGFVSKEMIKAHCPAPASDIKILRCGPPPMNKAMAAILN 265

Query: 268 ALGYTSQMQFQF 279
            +GYT +MQFQF
Sbjct: 266 DIGYTDEMQFQF 277


>GSVIVT01027210001 assembled CDS
          Length = 289

 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 193/276 (69%), Positives = 232/276 (84%), Gaps = 1/276 (0%)

Query: 4   LHSHKAEMISIAVALFAIGAGTAYYLYITSKKPKGCLDPQNFKEFKLVKRTQLSHNVAKF 63
           L +   E+   AV L A+G    Y+ Y   +KPKGCLDP+ F++FKLV++T++SHNV +F
Sbjct: 15  LKTPGIELSGFAVGLAAVGLAAVYFFY-GRRKPKGCLDPERFQDFKLVQKTRISHNVGRF 73

Query: 64  KFALPTPTSVLGLPIGQHMSCRGKDSLGEEVAKPYTPTTLDSDLGYFELVIKMYPQGRMS 123
           +FALPTPTSV GLP+GQH+ CRGKD  G EV +PYTP TLDSD+G++ELV+KMYP+G+MS
Sbjct: 74  RFALPTPTSVFGLPVGQHIICRGKDDQGAEVIRPYTPITLDSDVGFYELVVKMYPKGQMS 133

Query: 124 HHFREMREGDYLAVKGPKGRFKYQPNQVRVFGMLAGGTGITPMFQVTRAILENPNDKTNI 183
           HHFR+MREGD LAVKGP+GR  Y+P Q + FGMLAGGTGITPMFQ+TRAILENP DKTN+
Sbjct: 134 HHFRKMREGDTLAVKGPRGRLIYKPGQAKAFGMLAGGTGITPMFQLTRAILENPKDKTNV 193

Query: 184 HLIYANVTYEDILLKEELDNLANNFPNRFSVYYVLNQPPEGWDGGIGFVSKEMIEKHCPA 243
           HLIYAN++Y+DILLK+ELD  A  FPNRF V+YVL+QPPE W+GGIG +SKEMIEKHCPA
Sbjct: 194 HLIYANISYDDILLKDELDGFARKFPNRFKVFYVLSQPPEAWNGGIGHISKEMIEKHCPA 253

Query: 244 PAPDVQILRCGPPPMNKAMAAHLEALGYTSQMQFQF 279
           PAPD+QILRCGPP MNKAMA HL ALGYT QMQF+F
Sbjct: 254 PAPDIQILRCGPPGMNKAMAGHLVALGYTPQMQFEF 289


>GSVIVT01015504001 assembled CDS
          Length = 326

 Score =  227 bits (578), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 121/292 (41%), Positives = 173/292 (59%), Gaps = 31/292 (10%)

Query: 17  ALFAIGAGTAYYLYIT-----------SKKPKGCLDPQNFKEFKLVKRTQLSHNVAKFKF 65
           A+ A+  G +YY + +           +  PK  L+P  + EFKL     +SHN   F+F
Sbjct: 37  AIAAVSGGISYYCFSSENLVHLDQINENAGPKVALNPDKWLEFKLQDTASVSHNTQLFRF 96

Query: 66  ALPTPTSVLGLPIGQHMSCR---GKDSLGE--EVAKPYTPTTLDSDLGYFELVIKMYPQG 120
           +   PT+ LGL I   +  R   G+D  G+   V +PYTP +     GYF+L+IK+YP+G
Sbjct: 97  SF-DPTAKLGLDIASCILTRAPIGQDDEGKIKYVIRPYTPISDPDSKGYFDLLIKVYPEG 155

Query: 121 RMSHHFREMREGDYLAVKGPKGRFKYQPNQVRVFGMLAGGTGITPMFQVTRAILENPNDK 180
           +MS HF  ++ GD + VKGP  + +Y PN  +  GM+AGGTGITPM Q+  AIL+NP+DK
Sbjct: 156 KMSQHFSHLKPGDIIEVKGPIEKLRYTPNMKKQIGMIAGGTGITPMLQIIEAILKNPDDK 215

Query: 181 TNIHLIYANVTYEDILLKEELDNLANNFPNRFSVYYVLNQPPEGWDGGIGFVSKEMIEKH 240
           T + LIYANV+ +DILLK++LD LA   PN   ++Y ++ P   W GG G++SK+M+ K 
Sbjct: 216 TQVSLIYANVSPDDILLKKKLDMLAATHPN-LKIFYTVDNPSNNWRGGTGYISKDMVVKG 274

Query: 241 CPAPAPDVQILRCGPPPMNKAMAAH-------------LEALGYTSQMQFQF 279
            PAP+ D  IL CGPP M K ++ +             L+ LGYT  M ++F
Sbjct: 275 LPAPSDDSLILVCGPPGMMKHISGNKAKDYSQGELTGILKELGYTEDMVYKF 326


>GSVIVT01008935001 assembled CDS
          Length = 664

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 16/105 (15%)

Query: 168 QVTRAILENPNDKTNIHLIYANVTYEDILLKEELDNLANNFPNRFSVYYVLNQPPEGWDG 227
           Q+ +A+L++P D T ++++YAN T +DILL EELD  A     R  V             
Sbjct: 566 QIIQAVLKDPEDDTEMYVVYANRTEDDILLWEELDAWAEKH-ERLKV------------- 611

Query: 228 GIGFVSKEMIEKHCPAPAPDVQILRCGPPPMNK-AMAAHLEALGY 271
            +GF+++ ++ +H P+ + D   L CGPPPM + A+  +LE LGY
Sbjct: 612 -LGFITESILREHIPSASGDTLALACGPPPMIQFAVQPNLEKLGY 655