Jatropha Genome Database

JcCA0153671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153671.10 + phase: 2 /partial
         (147 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037440001 assembled CDS                                       199   3e-52
GSVIVT01019977001 assembled CDS                                       140   2e-34

>GSVIVT01037440001 assembled CDS
          Length = 553

 Score =  199 bits (507), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 1   TTLSELESAGQHYCEGDWNNLKNQHLGMDDLDLLRYCFSSAYMVALLHDSLGIPMDDKRI 60
            +LSELE AGQHYCE DW+ LK QH  +DDLDLLR+CFSSAY VALLHD+LGIPM+D RI
Sbjct: 384 ASLSELEVAGQHYCEDDWDTLKRQHSEVDDLDLLRHCFSSAYTVALLHDALGIPMNDTRI 443

Query: 61  GFANHTSS-HLDWTLGAFILESTLEPLDTEIDNLDQIVGNEWVTYFSXXXXXXXXXXXXX 119
           GF NHT    LDW LGAFIL++ LEPL+ E D+L QIVGNE VTYFS             
Sbjct: 444 GFGNHTGGIPLDWMLGAFILQTMLEPLELETDSLVQIVGNESVTYFSLFAFLLIAVLAAF 503

Query: 120 XXXQWRKPQLKTIYDLEKGHYIVTRVP 146
              +WRKPQLKTIYDLEKG YIVT VP
Sbjct: 504 FVLKWRKPQLKTIYDLEKGRYIVTHVP 530


>GSVIVT01019977001 assembled CDS
          Length = 373

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 91/144 (63%), Gaps = 1/144 (0%)

Query: 3   LSELESAGQHYCEGDWNNLKNQHLGMDDLDLLRYCFSSAYMVALLHDSLGIPMDDKRIGF 62
           LS+L  AGQH+CE DW+ LK ++   ++ DLL YCFSSAY+VA LHDSLGI +DD+RIG+
Sbjct: 226 LSDLTVAGQHFCEEDWSKLKRKYYSFNEEDLLHYCFSSAYIVAFLHDSLGIALDDERIGY 285

Query: 63  ANHTSS-HLDWTLGAFILESTLEPLDTEIDNLDQIVGNEWVTYFSXXXXXXXXXXXXXXX 121
           AN      LDW LGAFIL+ST        D +  +V +E  T  S               
Sbjct: 286 ANQVGDIPLDWALGAFILQSTTNLEAEHSDWITTVVSDESPTLLSLVVILIILMFTVWSI 345

Query: 122 XQWRKPQLKTIYDLEKGHYIVTRV 145
            + +KPQLKTIYDLEKG YIVTR+
Sbjct: 346 SKCKKPQLKTIYDLEKGRYIVTRI 369