Jatropha Genome Database

JcCA0153601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153601.20 + phase: 0 
         (240 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011794001 assembled CDS                                       325   1e-89

>GSVIVT01011794001 assembled CDS
          Length = 822

 Score =  325 bits (832), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 189/228 (82%), Gaps = 19/228 (8%)

Query: 1   MAAQSSAAATTNIMLAIYEKKTTSVDLYRPLRNYIAMFYSEREAQNLEDDLQTLKQYRTD 60
           MAA  S++AT +IMLAIYEKKT +V+LYRPLR YIA  YSEREAQNLEDDLQ LKQ R+D
Sbjct: 1   MAAPPSSSATASIMLAIYEKKTVTVELYRPLRQYIAFTYSEREAQNLEDDLQALKQMRSD 60

Query: 61  VERQSDPSPTSRRDLLQNYYKALCLVETRFPISPDKDHINSVTFVWYDAFKQKQKASQQN 120
           +E                    LCLVE+RFPISPD+DHINS+TF WYDAFKQKQKASQQN
Sbjct: 61  LE-------------------PLCLVESRFPISPDRDHINSITFTWYDAFKQKQKASQQN 101

Query: 121 IHLEKAAILFNLGAVYSQIGLSFDRTTVEGRRQAIHSFIAAAGAFAYLRDNAATKASMGS 180
           IHLEKAA+LFNLGAVYSQ+GL +DR++V+G RQA  +FIAAAGAFA+LRDNAA KAS+GS
Sbjct: 102 IHLEKAAVLFNLGAVYSQLGLFYDRSSVDGMRQAAQAFIAAAGAFAFLRDNAAMKASIGS 161

Query: 181 STTVDVSVECVGMLERLMLAQAQECVFENTIAKGSTPGVCAKIARQVS 228
           STTVDVSVEC GMLERLMLAQAQECVFENTIAKGSTP VC KIARQV 
Sbjct: 162 STTVDVSVECAGMLERLMLAQAQECVFENTIAKGSTPMVCTKIARQVG 209