Jatropha Genome Database

JcCA0153601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153601.10 - phase: 0 
         (280 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028311001 assembled CDS                                       355   1e-98
GSVIVT01005618001 assembled CDS                                       291   2e-79
GSVIVT01024746001 assembled CDS                                       129   2e-30

>GSVIVT01028311001 assembled CDS
          Length = 269

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 167/267 (62%), Positives = 209/267 (78%), Gaps = 14/267 (5%)

Query: 13  LASFIRSCLFHVLSVGPIPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFSALMLILKYCYE 72
           L +F+R C+F VLSVGPIP+H+AFIMDGNRRFAKK+ L  GAGHK G+ ALM +L+Y YE
Sbjct: 16  LGTFLRKCIFSVLSVGPIPNHIAFIMDGNRRFAKKQNLIEGAGHKVGYLALMSMLRYSYE 75

Query: 73  LGVKYVTVYAFSIDNFRRRPEEVKIVMDLMLEKIEGILKEESVVNQYGIRVYFLGNLNLL 132
           LGVKYVT+YAFSI+NF+RRPEEV+ VMDLM EKIE ++ EES++N +G+RV+F+GNL LL
Sbjct: 76  LGVKYVTIYAFSIENFKRRPEEVQSVMDLMQEKIEQLINEESILNHFGVRVHFIGNLKLL 135

Query: 133 TEPVRVAAQKVMKATASNTKCLLFICVAYTSLDEIIHAVHESCKDKLIKNTIFPDKPCTD 192
           + PVR+AA++ M  TA N+K +L ICVAYTS +EI+HAV ESC  K             D
Sbjct: 136 SAPVRLAAERAMLVTACNSKAVLSICVAYTSTNEIMHAVEESCVKKW------------D 183

Query: 193 AIEGEEKDSIKLVDLEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWP 252
            I   +   +  +  EKH+YMA+ P+PD+LIRTSGE+RLSNFLLWQ+ +C LYSP  LWP
Sbjct: 184 EIRELKASGVDYI--EKHLYMAVAPDPDILIRTSGETRLSNFLLWQSQYCYLYSPSVLWP 241

Query: 253 EIGLWNLVWAVLNFQRNHSYLEKKKKR 279
           EIG W+L+WAVLNFQRNH YLEKKKK+
Sbjct: 242 EIGFWHLLWAVLNFQRNHFYLEKKKKQ 268


>GSVIVT01005618001 assembled CDS
          Length = 242

 Score =  291 bits (745), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 190/282 (67%), Gaps = 43/282 (15%)

Query: 2   ELICNIEPMGVLASFIRSCLFHVLSVGPIPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFS 61
           E++     +GV A+   +  F V SV  IP+H+AFIMDGNRR+AKK KL  GAG+KAGF 
Sbjct: 1   EVVVKAGSLGVWAASGENGSF-VFSVSHIPNHIAFIMDGNRRYAKKWKLEEGAGYKAGFL 59

Query: 62  ALMLILKYCYELGVKYVTVYAFSIDNFRRRPEEVKIVMDLMLEKIEGILKEESVVNQYGI 121
           AL+ ++KYCY+LGVKY+ +YAFSIDNFRRRP+EV+ VMDLM EKI+G+LKE+S+VNQ+  
Sbjct: 60  ALLSMIKYCYKLGVKYIAIYAFSIDNFRRRPQEVQYVMDLMHEKIQGLLKEQSIVNQH-- 117

Query: 122 RVYFLGNLNLLTEPVRVAAQKVMKATASNTKCLLFICVAYTSLDEIIHAVHESCKDKLIK 181
                                              +CV YTS DEI+H+V ESCKDK  +
Sbjct: 118 -----------------------------------VCVVYTSSDEIVHSVQESCKDKWGE 142

Query: 182 NTIF-PDKPCTDAIEGEEKDS--IKLVDLEKHMYMALGPEPDVLIRTSGESRLSNFLLWQ 238
             +  P K C    + E +D   IKLVDLEKHMYM   P+PD+LIRTSG   LSNFLLWQ
Sbjct: 143 TQVLNPSKGCNVGGDDEIQDYSIIKLVDLEKHMYMRFAPDPDILIRTSG--CLSNFLLWQ 200

Query: 239 TSHCTLYSPDALWPEIGLWNLVWAVLNFQRNHSYLEKKKKRS 280
            + C LY P ALWPE+GL +L+WAVLNFQRNHSYLEKKKK+S
Sbjct: 201 ATTCLLYCPTALWPEVGLRHLMWAVLNFQRNHSYLEKKKKQS 242


>GSVIVT01024746001 assembled CDS
          Length = 233

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 30  IPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFSALMLILKYCYELGVKYVTVYAFSIDNFR 89
           +P H+A IMDGN R+A+K  L   +GH+AG  +L  ++  C + G+K ++V+AFS DN+ 
Sbjct: 1   MPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLSVFAFSYDNWS 60

Query: 90  RRPEEVKIVMDLMLEKIEGILKEE-SVVNQYGIRVYFLGNLNLLTEPVRVAAQKVMKATA 148
           R   EV  +M L    IE ++K E     + GIRV  +G+L+ L E ++     V + T 
Sbjct: 61  RSEGEVGFLMSL----IERVVKAELPNFGREGIRVSVIGDLSKLPEQLQKLIIDVEETTK 116

Query: 149 SNTKCLLFICVAYTSLDEIIHAVHESCKDKLIKNTIFPDKPCTDAIEGEEKDSIKLVDLE 208
            N++    + ++Y+   +I+ A    CK+   K          D +   E  +  L++ E
Sbjct: 117 ENSRLQFIVALSYSGQCDILQA----CKNIGYK--------VKDGLIEPEDINKSLIEQE 164

Query: 209 KHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVWAVLNFQR 268
                   P PD+LIRTSGE R+SNF+LWQ ++  L     LWP+ G    V A+ +FQ+
Sbjct: 165 LQTNCTEFPFPDLLIRTSGELRVSNFMLWQIAYTELCFFSTLWPDFGKDEFVEALSSFQK 224

Query: 269 NH 270
             
Sbjct: 225 RQ 226