Jatropha Genome Database

JcCA0153521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153521.20 + phase: 0 
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010306001 assembled CDS                                       242   1e-64

>GSVIVT01010306001 assembled CDS
          Length = 144

 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 131/141 (92%), Gaps = 1/141 (0%)

Query: 87  MANVYLWYPLSLVTGGTTAKITVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFK 146
           MANVYLWYPLSL+TGGTTAKI VAAKDNFLGKYIY+DT+ARNLAAVIY+DEKEIQKTAF+
Sbjct: 1   MANVYLWYPLSLITGGTTAKIMVAAKDNFLGKYIYRDTIARNLAAVIYKDEKEIQKTAFR 60

Query: 147 QYRVLRSATEFRYGYKLVENGNMRAALSTSDVIELPTEDQLKTVFDKVKDFFGGAKESFG 206
           QYRVLRSA EFRYGYKLVEN N+R+ALST+DVIELPT+ +LKTV DKV+DFFG AKESFG
Sbjct: 61  QYRVLRSAKEFRYGYKLVENNNVRSALSTTDVIELPTQGELKTVLDKVRDFFGDAKESFG 120

Query: 207 KLTALNS-AEETEEVSKENTK 226
           KLTALNS  EE+E++S E +K
Sbjct: 121 KLTALNSTTEESEQMSNEKSK 141