Jatropha Genome Database

JcCA0153501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153501.20 + phase: 0 /pseudo/partial
         (196 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017814001 assembled CDS                                       226   7e-60
GSVIVT01011001001 assembled CDS                                       216   4e-57
GSVIVT01021972001 assembled CDS                                       206   7e-54
GSVIVT01000002001 assembled CDS                                       172   1e-43
GSVIVT01037753001 assembled CDS                                       152   7e-38

>GSVIVT01017814001 assembled CDS
          Length = 541

 Score =  226 bits (575), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 137/172 (79%)

Query: 1   MGFNLGSLVVRLGLKSGSDEVHVDSITLFVTLICACIIIGHLLEKNRWMNESITALAIGL 60
           MGF LGS+V++LG+ S SD   V S+ LFV L+CACI++GHLLE+ RWMNESITALA+GL
Sbjct: 1   MGFELGSVVMKLGMVSTSDHSSVVSMNLFVALLCACIVVGHLLEEYRWMNESITALALGL 60

Query: 61  CTGVIILLTTQGKSSHLFLFDEHLFFIYVLPPIIFNAGFQVKKKQFFRNFMTIVLFGAVG 120
           CTG+IILLTT+GKSSH+ +F E LFFIY+LPPIIFNAGFQVKKKQFFRNFMTI+LFGA+G
Sbjct: 61  CTGIIILLTTRGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIG 120

Query: 121 TLISFIIISVGSAKLFKKLNIDFLDTVDYLGTLAL*FL*NYVCSLTYVYTRE 172
           TLISF IIS+G+   FKK+ I  LD  DYL   A+    + VC+L  +   E
Sbjct: 121 TLISFGIISLGAIHFFKKMKIGSLDIGDYLALGAIFSATDSVCTLQVLNQDE 172


>GSVIVT01011001001 assembled CDS
          Length = 538

 Score =  216 bits (551), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/161 (67%), Positives = 133/161 (82%)

Query: 12  LGLKSGSDEVHVDSITLFVTLICACIIIGHLLEKNRWMNESITALAIGLCTGVIILLTTQ 71
           LG++S SD+V +D+ITLFV L+CACI+IGHLLE+ RWMNESITAL IGLCTG+++LLTT 
Sbjct: 9   LGMRSTSDQVSIDAITLFVALLCACIVIGHLLEEYRWMNESITALFIGLCTGIVLLLTTG 68

Query: 72  GKSSHLFLFDEHLFFIYVLPPIIFNAGFQVKKKQFFRNFMTIVLFGAVGTLISFIIISVG 131
           GK S + LF+E LFFIY+LPPIIFNAGFQVKKKQFFRNFMTI+LFGA+GTLISF IIS+G
Sbjct: 69  GKISLILLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNFMTIILFGAIGTLISFGIISLG 128

Query: 132 SAKLFKKLNIDFLDTVDYLGTLAL*FL*NYVCSLTYVYTRE 172
           + +LFKKL+I FL+  DYL   A+    + VC+L  +   E
Sbjct: 129 AIQLFKKLDIGFLEIGDYLAIGAIFSATDSVCTLQVLNQDE 169


>GSVIVT01021972001 assembled CDS
          Length = 540

 Score =  206 bits (523), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 127/172 (73%)

Query: 1   MGFNLGSLVVRLGLKSGSDEVHVDSITLFVTLICACIIIGHLLEKNRWMNESITALAIGL 60
           M    GS++ RLG  S SD   V SI LFV L+C CI+IGHLLE+NRW+NESITAL IG+
Sbjct: 2   MASQFGSMLTRLGNLSTSDHASVVSINLFVALLCGCIVIGHLLEENRWVNESITALVIGV 61

Query: 61  CTGVIILLTTQGKSSHLFLFDEHLFFIYVLPPIIFNAGFQVKKKQFFRNFMTIVLFGAVG 120
           CTGV+ILLT+ G+SSHL +F E LFFIY+LPPIIFNAGFQVKKKQFFRNF+TI+LFGAVG
Sbjct: 62  CTGVVILLTSGGRSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIMLFGAVG 121

Query: 121 TLISFIIISVGSAKLFKKLNIDFLDTVDYLGTLAL*FL*NYVCSLTYVYTRE 172
           TLIS  II+ G  + F KL+I   D  DYL   A+    + VC+L  +   E
Sbjct: 122 TLISCGIITSGVMQFFSKLDIGSFDIGDYLAIGAIFSATDSVCTLQVLNQDE 173


>GSVIVT01000002001 assembled CDS
          Length = 541

 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 123/175 (70%), Gaps = 4/175 (2%)

Query: 1   MGFNLGSLVVRLGLKSGS---DEVHVDSITLFVTLICACIIIGHLLEKNRWMNESITALA 57
           MGF L ++  +  L+  S   +   V ++ LF  L+CACI+IGHLLE++RW NESITAL 
Sbjct: 1   MGF-LDAIPNKHSLQDSSSFLNTTTVIALCLFFALLCACIVIGHLLEEHRWANESITALL 59

Query: 58  IGLCTGVIILLTTQGKSSHLFLFDEHLFFIYVLPPIIFNAGFQVKKKQFFRNFMTIVLFG 117
           +GLC GV++LL ++G+SS +  F+E LFF+Y+LPPIIFNAGFQVKKKQFF+NF  I++FG
Sbjct: 60  LGLCAGVVVLLVSKGRSSKILAFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFSIILMFG 119

Query: 118 AVGTLISFIIISVGSAKLFKKLNIDFLDTVDYLGTLAL*FL*NYVCSLTYVYTRE 172
             GT+ISF +IS G+  LFKK+ I  L+  DYL   A+    + VC+L  +   E
Sbjct: 120 VFGTIISFCLISAGAFLLFKKIGITTLNIEDYLAVGAILSATDSVCTLQVLNQEE 174


>GSVIVT01037753001 assembled CDS
          Length = 524

 Score =  152 bits (385), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 112/166 (67%), Gaps = 6/166 (3%)

Query: 17  GSDEVHVDSITLFVTLICACIIIGHLLEKNRWMNESITALAIGLCTGVIILLTTQGKSSH 76
             D   V  I++FV ++C C++IGHLLE+NRW+NES TA+ IG  TG IILL ++GKSSH
Sbjct: 11  AGDHAQVVLISVFVAVLCLCLVIGHLLEENRWLNESTTAIIIGCITGTIILLLSKGKSSH 70

Query: 77  LFLFDEHLFFIYVLPPIIFNAGFQVKKKQFFRNFMTIVLFGAVGTLISFIIISVGSAKLF 136
           +  F+E LFFIY+LPPIIFNAGFQVKKKQFF+NF+TI+LFG +G  IS  II+ G+  LF
Sbjct: 71  ILRFNEELFFIYLLPPIIFNAGFQVKKKQFFQNFITIMLFGVIGVFISSSIITAGAWWLF 130

Query: 137 KKLNIDFLDTVDYLGTLAL*FL*NYVCSLTYVYTREILHLDAAIVL 182
            +     L   DYL    +    + VC+L      ++LH D   +L
Sbjct: 131 PRFGFTGLSAQDYLAIGTIFSSTDTVCTL------QVLHQDETPLL 170