Jatropha Genome Database

JcCA0153501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153501.10 - phase: 0 /pseudo/partial
         (168 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010999001 assembled CDS                                       100   4e-22
GSVIVT01029701001 assembled CDS                                        92   1e-19
GSVIVT01017810001 assembled CDS                                        86   1e-17
GSVIVT01018940001 assembled CDS                                        80   7e-16
GSVIVT01009728001 assembled CDS                                        77   4e-15
GSVIVT01014191001 assembled CDS                                        62   2e-10

>GSVIVT01010999001 assembled CDS
          Length = 228

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 71/126 (56%), Gaps = 10/126 (7%)

Query: 48  MPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFLANXRFRYPXS 107
           MPPELLRDVLMRIEASE TWP RKNVVACAGVCR+WREI K++ K        +  +P S
Sbjct: 1   MPPELLRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSG--KLTFPIS 58

Query: 108 SQVPGIPFFS-----ATSNEIVATKHIICTSAXTKLQTMMVSFFLLHGGAGGPTCTDYII 162
            + PG P  S        N    T H+       +  T    F L       PTCTDYII
Sbjct: 59  LKQPG-PRGSLLQCYIKRNRSNQTYHLYL--GLNQASTDDGKFLLAARKCRRPTCTDYII 115

Query: 163 SLNCDD 168
           SLN DD
Sbjct: 116 SLNADD 121


>GSVIVT01029701001 assembled CDS
          Length = 310

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 1   MRGEFGSMSRKGFDVKFGYGMXXXXXXXXXXXXFVPVDAFNQSCWANMPPELLRDVLMRI 60
           +R  FGS+SR+ FDV+                   P+     S WAN+PPELL D++ R+
Sbjct: 10  VRDGFGSLSRRSFDVRLLGHSRGKSIGSFHEMHDQPL-VIQNSRWANLPPELLYDIIKRL 68

Query: 61  EASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFLANXRFRYPXSSQVPG-----IPF 115
           E SE TWPSRK+VVACA VCR+WR + K++ +   F A  +  +P S + PG     I  
Sbjct: 69  EESESTWPSRKHVVACAAVCRSWRTMCKEIVRSPEFCA--KLTFPVSLKQPGPRDGTIQC 126

Query: 116 FSATSNEIVATKHIICTSAXTKLQTMMVSFFLLHGGAGGPTCTDYIISLNCDD 168
           F       +     +C S    L      F L        TCT+Y+IS++ ++
Sbjct: 127 FIKRDKSNLTYHLFLCLSP--ALLVENGKFLLSAKRNRRTTCTEYVISMDAEN 177


>GSVIVT01017810001 assembled CDS
          Length = 350

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 48  MPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFLANXRFRYPXS 107
           MP ELLR+VL+RIEAS+ TWPSRKNVVACAGVC++WR I ++L K     A+    +P S
Sbjct: 1   MPEELLREVLIRIEASDTTWPSRKNVVACAGVCKSWRRITQELVKTPEVSAS--LTFPIS 58

Query: 108 SQVPGIPFFS-----ATSNEIVATKHIICTSAXTKLQTMMVSFFLLHGGAGGPTCTDYII 162
            + PG P  S        N    T ++  +   T   T    F L        TCTDYII
Sbjct: 59  VKQPG-PRESLLKCFIKRNRSAQTYYLYLSL--TNALTEDGKFLLAARKYRRTTCTDYII 115

Query: 163 SLNCDD 168
           SL  DD
Sbjct: 116 SLYADD 121


>GSVIVT01018940001 assembled CDS
          Length = 342

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 39  AFNQSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFLA 98
           A  Q  WAN+PPELL D++ R+E SE +WP+R  VV CA VCR+WREI K++ K      
Sbjct: 48  ALQQGQWANLPPELLLDIIQRVEESETSWPARNVVVFCASVCRSWREITKEIVKTPEECG 107

Query: 99  NXRFRYPXSSQVPGIPFFSATS---NEIVATKHIICTSAXTKLQTMMVSFFLLHGGAGGP 155
             R  +P S + PG P  S          AT   +     T  +       L       P
Sbjct: 108 --RLTFPISLKQPG-PRDSPIQCFIRRDRATSTYLLYFGLTPSEGQSDKLLLAARRIRRP 164

Query: 156 TCTDYIISLNCDD 168
           T TD++ISL  DD
Sbjct: 165 TSTDFVISLVADD 177


>GSVIVT01009728001 assembled CDS
          Length = 367

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 43/52 (82%)

Query: 41  NQSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXK 92
            QS WANMPPELL D++ R+EA+E +WP+R++VV+C  VCR+WR+I K++ K
Sbjct: 52  QQSQWANMPPELLLDIIQRVEAAEASWPARRDVVSCGSVCRSWRDITKEIVK 103


>GSVIVT01014191001 assembled CDS
          Length = 325

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 14/128 (10%)

Query: 48  MPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFLANXRFRYPXS 107
           M PELL +++ R+EASE  WP+R+NVV+CA VC+ WR+I +++  +   L + +  +P  
Sbjct: 1   MLPELLGEIIQRVEASENRWPTRRNVVSCACVCKRWRDITREV--VRSRLDSGQITFPSC 58

Query: 108 SQVPGIPFFSATSNEIVATK-------HIICTSAXTKLQTMMVSFFLLHGGAGGPTCTDY 160
            + PG P  S     I   K       ++  +S+ T     +++      GA     T+Y
Sbjct: 59  LKQPG-PRNSEHQCLIKRNKKNSTFYLYLALSSSFTDKGKFLLAARRYRHGAH----TEY 113

Query: 161 IISLNCDD 168
           IISL+ DD
Sbjct: 114 IISLDADD 121