Jatropha Genome Database

JcCA0153321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153321.10 - phase: 0 
         (588 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037357001 assembled CDS                                       588   e-168
GSVIVT01019825001 assembled CDS                                        53   3e-07

>GSVIVT01037357001 assembled CDS
          Length = 941

 Score =  588 bits (1516), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 324/538 (60%), Positives = 363/538 (67%), Gaps = 37/538 (6%)

Query: 1   MKAHDKGNGNAAKPAQLATTKTEK-KPPSVESKPERPAQGGEENSGRRKTSKYFAKDKQK 59
           MK HD  NGN  KPA+     ++  KP     + E+P  GG+E+S RRKTSKYF    QK
Sbjct: 13  MKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRRKTSKYF----QK 68

Query: 60  PKAEKEVDELPAKRKTQNDANESVKLPPLKKIHKVXXXXXXXXFVLPDKKKSVDATPSKK 119
           PK EKE++ELPAKRKTQ    ES+  P                             PSKK
Sbjct: 69  PKDEKEMEELPAKRKTQKGTKESLNPP-----------------------------PSKK 99

Query: 120 LKTVSGRGXXXXXXXXXXXXXXXXXXXXXLKXXXXXXXXXXXXXXXXXXXXXXXXXXXFM 179
           ++ V                         +K                           FM
Sbjct: 100 IRRVVDDDDDDFVLHKSDDEKVDKDTEPPIKSGGRGRGGRGALVTPAGGRGRGGGRGGFM 159

Query: 180 NFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 239
           NFGERKDPPHKGEKEVPEGA DCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK
Sbjct: 160 NFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 219

Query: 240 KTNYLLCDEDIEGRKSSKAKELGTPFLTEDGLFNMI-RSSKAKAPALNEAKESVKKVA-S 297
           KTN+LLCDEDI G KS+KAKELGT FLTEDGLF+MI  S+ AKAPA  E K+S+ KV  +
Sbjct: 220 KTNFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMICASNHAKAPARGEPKKSLDKVVLA 279

Query: 298 QPKKSPEKAEVKCNSITKNGSRKDSTSGVSPAKQKERTNICSSLPWTEKYRPKAPNDIIG 357
            PKKSP+K E K + +  +  ++   +  +P K   +T   +SL WTEKY+PK PNDIIG
Sbjct: 280 TPKKSPQKVEKKVDQVVNSSGKRTVLAATTP-KHIYQTIGHASLTWTEKYKPKVPNDIIG 338

Query: 358 NQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQNDSGAKKAVLLSGTPGIGKTTAAKLVSRM 417
           NQSLV QLH WL +W+EQFL TG KGK KKQNDSGAKKAVLLSGTPGIGKTT+AKLVS+M
Sbjct: 339 NQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQM 398

Query: 418 LGFQAIEVNASDSRGKADNKISKGIGGSNANCIKELVSNEALGVNMDRSKHPKTVLIMDE 477
           LGFQAIEVNASD+RGKA+ KI KGIGGSNAN IKELVSNEALG +MDRSKHPKTVLIMDE
Sbjct: 399 LGFQAIEVNASDNRGKANAKIDKGIGGSNANSIKELVSNEALGAHMDRSKHPKTVLIMDE 458

Query: 478 VDGMSAGDRGGVADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCLLLSFRKPTKQQV 535
           VDGMSAGDRGGVADL               NDRYSQKLKSLVNYCLLLSFRKPTKQQ+
Sbjct: 459 VDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQM 516


>GSVIVT01019825001 assembled CDS
          Length = 330

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 40/149 (26%)

Query: 341 LPWTEKYRPKAPNDIIGNQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQNDSGAKKAVLLS 400
           +PW EKYRP    DI+GN+  V++L    ++                    G    ++LS
Sbjct: 12  MPWVEKYRPTKVADIVGNEDTVSRLQVIARD--------------------GNMPNLILS 51

Query: 401 GTPGIGKTTAA-KLVSRMLGFQ----AIEVNASDSRGKADNKISKGIGGSNANCIKELVS 455
           G PG GKTT+   L   +LG       +E+NASD RG    +          N IK    
Sbjct: 52  GPPGTGKTTSVLALAHELLGANYREAVLELNASDDRGIDVVR----------NKIKMFAQ 101

Query: 456 NEALGVNMDRSKHPKTVLIMDEVDGMSAG 484
            +   V +    H   ++I+DE D M+ G
Sbjct: 102 KK---VTLPSGSHK--IVILDEADSMTTG 125