Jatropha Genome Database

JcCA0152991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152991.20 + phase: 2 /partial
         (154 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015546001 assembled CDS                                       185   7e-48
GSVIVT01017319001 assembled CDS                                       154   2e-38
GSVIVT01035855001 assembled CDS                                       153   3e-38
GSVIVT01016184001 assembled CDS                                        95   1e-20

>GSVIVT01015546001 assembled CDS
          Length = 160

 Score =  185 bits (470), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 120/155 (77%), Gaps = 1/155 (0%)

Query: 1   GCFGCCAKPSTINAVDQSSKGLRIKDERAKQHSIPDDFWSSSAGDMDYSGVQSQRSASSI 60
           GC GCC KP+ I AVD+ SKGLRI+    K+ SI +DFWS+S  ++D S VQSQRS SSI
Sbjct: 6   GCLGCCTKPTPIIAVDEPSKGLRIQGRTVKKPSISEDFWSTSTCEIDNSTVQSQRSISSI 65

Query: 61  SALNQPFDPSANAGSTSNPSEFVNYGLLLWKQTRQQWLANKRSPNK-KQVREPTIRWNAT 119
           S  NQ     +  GSTSN SEF+N+GLLLW QTR QW+ NKRS N+ +Q+REP +RWNAT
Sbjct: 66  STSNQSLTHYSGIGSTSNNSEFINHGLLLWNQTRLQWVGNKRSENQSQQIREPRLRWNAT 125

Query: 120 YENLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           YE LLG+N+ F +PIPL+EM+DFLVDVWEQEG+YD
Sbjct: 126 YEGLLGTNRRFSQPIPLSEMIDFLVDVWEQEGMYD 160


>GSVIVT01017319001 assembled CDS
          Length = 232

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 113/153 (73%), Gaps = 2/153 (1%)

Query: 3   FGCCAKPSTINAVDQSSKGLRIKDERAKQHSIPDDFWSSSAGDMDYSGVQSQRSASSISA 62
             C  +P  I ++++ SK LRI+   + + +I +DFW++SA DMD S +QSQ S SSIS 
Sbjct: 81  LACYREPKLIKSLNEPSKELRIRGRTSTKPNISEDFWTTSACDMDNSAMQSQGSISSIST 140

Query: 63  LNQPFDPSANAGSTSNPSEFVNYGLLLWKQTRQQWLANKRSPNK-KQVREPTIRWNATYE 121
            NQ   P   AG+   PSEFVN+GLLLW QTRQ W+ NKRS N+ +Q++EP I WNATY+
Sbjct: 141 SNQILVPHGAAGANV-PSEFVNHGLLLWNQTRQNWIRNKRSDNQAQQIQEPKINWNATYD 199

Query: 122 NLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           +LLGSNKPF +P+PL+EMVDFLVD W++EGLYD
Sbjct: 200 SLLGSNKPFRQPVPLSEMVDFLVDDWDREGLYD 232


>GSVIVT01035855001 assembled CDS
          Length = 117

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 93/117 (79%), Gaps = 8/117 (6%)

Query: 46  MDYSGVQSQRSASSISALNQPFDPSANAGSTSNPSEFVN--------YGLLLWKQTRQQW 97
           MD S VQSQ S SSIS  NQ FDP +NAGSTSNP EFVN        +GLLLW QTRQQW
Sbjct: 1   MDNSAVQSQGSISSISTSNQTFDPHSNAGSTSNPPEFVNHGNCSHFHFGLLLWNQTRQQW 60

Query: 98  LANKRSPNKKQVREPTIRWNATYENLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           + N++S N+KQV+EP I WNATYE+LLG+NKP P+PIPL EMVDFLVDVWEQEGLYD
Sbjct: 61  IGNQKSQNRKQVQEPRISWNATYESLLGTNKPLPQPIPLPEMVDFLVDVWEQEGLYD 117


>GSVIVT01016184001 assembled CDS
          Length = 109

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 5/104 (4%)

Query: 56  SASSISALNQPFDPSANAGSTSNPSE-----FVNYGLLLWKQTRQQWLANKRSPNKKQVR 110
           +  S S   Q  + SA+A     P E     F+N+  + W   R++W+ ++   ++++ +
Sbjct: 6   TGGSHSNEKQTLECSASANEQKEPMEVSTFVFINHAAIAWHDRRREWVGDQSQKSQRKQK 65

Query: 111 EPTIRWNATYENLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           +P I W+ TYE+LL +N+PF  PIPL EMVDFLVD+W+ EGLYD
Sbjct: 66  DPIISWSMTYEDLLSTNEPFSEPIPLTEMVDFLVDIWQDEGLYD 109