Jatropha Genome Database

JcCA0152731.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152731.20 + phase: 0 
         (205 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027181001 assembled CDS                                       316   4e-87

>GSVIVT01027181001 assembled CDS
          Length = 197

 Score =  316 bits (810), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/200 (74%), Positives = 175/200 (87%), Gaps = 3/200 (1%)

Query: 6   MGTVSATTPWKQLLIRALESNSHLKHSSFFQLATVGSDGRPSNRTVVFRGFEENSDKIQI 65
           MGTV +   WKQLL+RAL+SNS LKHSSFFQLATVGS GRPSNRTVVFRGF+ +SDKIQI
Sbjct: 1   MGTVVS---WKQLLLRALDSNSSLKHSSFFQLATVGSSGRPSNRTVVFRGFQGDSDKIQI 57

Query: 66  NTDTRTRKVEELKQCPFAEICWYFTDSWEQFRINGRVDVIDGSNLDSVKLQLREKSWYDS 125
           NTD RTRK+EELK CPF+EICWYFTDSWEQFRINGRVDVIDGS+ D +KLQ RE +W+ S
Sbjct: 58  NTDGRTRKIEELKHCPFSEICWYFTDSWEQFRINGRVDVIDGSDPDPMKLQERENAWFAS 117

Query: 126 SIKSRMQYLGPNPGLPCLNERPSNEFFLDPSSGPVAPFCLLIVDPEQVDYLNLKSNQRIM 185
           S+KSR+QYLGPNPGLPCL+E+P+ E   DPS+GPVA FCLLI+DP+QVDYLNLK+N+R+ 
Sbjct: 118 SLKSRLQYLGPNPGLPCLSEQPAQECSPDPSTGPVAAFCLLILDPDQVDYLNLKNNERLT 177

Query: 186 FTFTQNANGENCWNSVRINP 205
           FT ++N +G  CWNS +INP
Sbjct: 178 FTSSKNVDGVKCWNSEKINP 197