Jatropha Genome Database

JcCA0152731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152731.10 + phase: 0 /partial
         (120 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027182001 assembled CDS                                        45   9e-06

>GSVIVT01027182001 assembled CDS
          Length = 254

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 6   KIHLPIPVRFTCL-SLPRNDSFECNSLCXXXXXXXXXXXXXXXXNNWFNFKENDDH---- 60
           K+HLP PVR T L S+ RN+SFE N++                   W +F++  D     
Sbjct: 134 KVHLPKPVRVTSLISMSRNNSFESNTVSGGSGSSSGGNGESLP---WPSFRDIRDDKVIG 190

Query: 61  --GISFLVGD-VGHEFVNGTD---HDDLAPTESGNXXXXXXXXXXXXXTDDRDQVKLDSF 114
             G+ F +GD  G + V  +D      + PT+  N               +  QV+LDSF
Sbjct: 191 VDGVDFFIGDDQGQDLVASSDPESQSHMPPTD--NSLDKLYEEYLQLLEREDTQVQLDSF 248

Query: 115 AESLLL 120
           AESLL+
Sbjct: 249 AESLLI 254