Jatropha Genome Database

JcCA0152721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152721.10 + phase: 0 /partial
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017856001 assembled CDS                                       221   4e-58
GSVIVT01036490001 assembled CDS                                       166   1e-41

>GSVIVT01017856001 assembled CDS
          Length = 335

 Score =  221 bits (562), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 171/287 (59%), Gaps = 30/287 (10%)

Query: 9   GFEGYEKRLEVSFSEPGFFADPG-GMGLRSLSKAQIDEILKPAECTIVDSLSNDHVDSYV 67
           GFEG+EKRLE+ FS      DP  GMGLR L    ++++L   +CT+V ++ N + D+YV
Sbjct: 5   GFEGFEKRLELHFSG----DDPVVGMGLRHLDFESLEQVLHAVQCTVVSAVGNHYFDAYV 60

Query: 68  LSESSLFIYPYKVIIKTCGTTKLLLSIPAILKLAGTLSLTVHSVRYSRGSFIFPGAQSFP 127
           LSESSLF+YP K+IIKTCGTT+LL SIP +L     L L +   RY+RGSFIFP AQ FP
Sbjct: 61  LSESSLFVYPTKIIIKTCGTTQLLKSIPPLLHHGRHLGLAMCGCRYTRGSFIFPKAQPFP 120

Query: 128 HRSFSEEVAVLDGHFGKLGLESVAYVMGSPDKTQKWHVYSASLDTGRHSSSVQTLEMCMT 187
           H SF +EV  L+           A VM S   +  WHV+SAS                  
Sbjct: 121 HTSFRDEVIYLEQSLPSTLCYRKASVMPSKMSSHSWHVFSAS------------------ 162

Query: 188 GLDRDRASVFYKTPASSAAG--MTEESGIRKILPQSEICDFDFEPCGYSMNSIEGGAIST 245
             D     + +   A   AG  MTE +GI  I P + ICDF F+PCGYSMN I+G   ST
Sbjct: 163 --DEPHMVLQHMPDAGDVAGKEMTELTGIGDINPGALICDFAFDPCGYSMNGIDGDRYST 220

Query: 246 IHVTPEDGFSYASFEAVG--YNLEQVKLTLLLERVLACFEPAEFSIA 290
           IHVTPEDG+SYASFE VG  Y+ +Q  +  +L++V+  F PA  S++
Sbjct: 221 IHVTPEDGYSYASFECVGSIYD-DQNDVVQVLKKVVQVFRPATMSVS 266


>GSVIVT01036490001 assembled CDS
          Length = 136

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 95/142 (66%), Gaps = 32/142 (22%)

Query: 153 VMGSPDKTQKWHVYSASLDTGRHSSSVQTLEMCMTGLDRDRASVFYKTPASSAAGMTEES 212
           +MGS DK QKWHVY+A+ D                                SAA MTE S
Sbjct: 1   MMGSHDKPQKWHVYTAAAD--------------------------------SAAVMTENS 28

Query: 213 GIRKILPQSEICDFDFEPCGYSMNSIEGGAISTIHVTPEDGFSYASFEAVGYNLEQVKLT 272
           GIRKILP SEICDF+F+PCGYSMN+IE  AISTIHVTPEDGFSYASFEA+GYNL    LT
Sbjct: 29  GIRKILPNSEICDFEFDPCGYSMNAIEEDAISTIHVTPEDGFSYASFEAMGYNLNDDSLT 88

Query: 273 LLLERVLACFEPAEFSIALHSD 294
            +LERVL CF+PA FS+ALH+D
Sbjct: 89  QMLERVLDCFQPAHFSVALHAD 110