Jatropha Genome Database

JcCA0152521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152521.10 - phase: 0 
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037941001 assembled CDS                                       325   1e-89
GSVIVT01025127001 assembled CDS                                        77   6e-15

>GSVIVT01037941001 assembled CDS
          Length = 294

 Score =  325 bits (832), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/209 (77%), Positives = 176/209 (84%)

Query: 1   MVIGLGSGNASGMAIQYLGRQLRTGALKDIVGIPMSVXXXXXXXXXXIPLDQYQDGSQID 60
           MVIGLGSG+AS MAIQYLGRQLRTGALKDI GIPMSV          IPL  YQD SQID
Sbjct: 66  MVIGLGSGHASDMAIQYLGRQLRTGALKDITGIPMSVASASEAAKVGIPLGHYQDCSQID 125

Query: 61  FAFDDADLIEEETLIAVIGRRKSQVEESIIQEKSILNAANKHVFIIPEKQYKGVIDGSIP 120
           FAFDDAD+IEE TL+A+IGRR+ Q  ESIIQEKSIL AA+K VFII EKQYK  ++G IP
Sbjct: 126 FAFDDADVIEEGTLVAIIGRRRLQGNESIIQEKSILKAADKLVFIIQEKQYKCDLEGLIP 185

Query: 121 VLVQSLNWMEAAEEIDDLFLGDAEVWRRPSIGDAGPLGGDFPLVTREGHNVLDVIFTSPI 180
           VLVQSLNWME AEEIDDLFLGDAEVWRRPSIG AGPLGGDFPLVT EGHN+LDVIFTSPI
Sbjct: 186 VLVQSLNWMETAEEIDDLFLGDAEVWRRPSIGHAGPLGGDFPLVTSEGHNILDVIFTSPI 245

Query: 181 QSLAEVAKSLDKVAGVVDHGIISKFPLVS 209
             LAEVA+SLDK+ GVV+HG+ISK P ++
Sbjct: 246 LKLAEVAESLDKIDGVVEHGVISKIPCIA 274


>GSVIVT01025127001 assembled CDS
          Length = 322

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 15/204 (7%)

Query: 1   MVIGLGSGNASGMAIQYLGRQLRTGALKDIVGIPMSVXXXXXXXXXXIPLDQYQDGSQID 60
           MV+GLG+G+ +  A+  +G  LR G LK+IVGIP S           IPL        +D
Sbjct: 75  MVLGLGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKMTHEQAVSLGIPLSDLDSYPILD 134

Query: 61  FAFDDADLIEEETLIAVIGRRKSQVEESIIQEKSILNAANKHVFIIPEKQYKGVIDGS-- 118
            A D AD + +  L  V GR       S+++EK +  A  K V I+ E +    + GS  
Sbjct: 135 LAIDGADEV-DPYLNLVKGRGG-----SLLREKMVEGACKKFVVIVDESKLVNYLGGSGL 188

Query: 119 -IPVLVQSLNWMEAAEEIDDLFLGDAEVWRRPSIGDAGPLGGDFPLVTREGHNVLDVIFT 177
            +PV +    W   A+ +  LF     V +  +  +        P VT   + ++D+ F 
Sbjct: 189 AMPVEIVPFCWKFTAQRLQMLFEESGCVAKLRTYQNGE------PFVTDNMNYIVDLYFK 242

Query: 178 SPIQSLAEVAKSLDKVAGVVDHGI 201
             I  L   + ++ ++AGVV+HG+
Sbjct: 243 REIGDLKVASDAILRLAGVVEHGM 266