Jatropha Genome Database

JcCA0152411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.20 + phase: 0 
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028100001 assembled CDS                                       335   1e-92
GSVIVT01001769001 assembled CDS                                        69   1e-12
GSVIVT01001772001 assembled CDS                                        66   1e-11

>GSVIVT01028100001 assembled CDS
          Length = 213

 Score =  335 bits (859), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 178/213 (83%), Gaps = 4/213 (1%)

Query: 1   MGWLTRFLAAVAFLAIGVIFSPETFGSKS----VSQLSTYLKLAHLLSFSTAFGAALWVT 56
           MGWLTRFL AV FLA+GVIFSPETFGSKS     S+L+  LKLAHLL F+TA+GAALWVT
Sbjct: 1   MGWLTRFLGAVTFLAVGVIFSPETFGSKSDGSHSSKLTAALKLAHLLCFATAWGAALWVT 60

Query: 57  FIGGIIMFKNLPRHQFGNLQSKMFPAYFWLVGVCCATSVGSFGYLHPWKSASTAEKYQLG 116
           FIGGIIMFKNLPRH FGNLQSKMFPAYF +VGVCCA S  SFGYLHPWKS+STAEKYQLG
Sbjct: 61  FIGGIIMFKNLPRHTFGNLQSKMFPAYFSMVGVCCAVSTASFGYLHPWKSSSTAEKYQLG 120

Query: 117 XXXXXXXXXXXXXXVFTPMTIEMMRQRHKVEREENIGTEVGWSKNQEAAKTNPKLAAMNK 176
                         VFTPMTIEMM+QRHKVERE+NIG E+G SKN+E AK NPKLAAMNK
Sbjct: 121 FLLSAFAFNLTNLLVFTPMTIEMMKQRHKVEREQNIGEEIGRSKNKEVAKVNPKLAAMNK 180

Query: 177 KFGMIHGFSSLANIMSFGGLAMHSWYLAGKLNL 209
           KFGMIHG SSLANIMSFG LAMHSWYLAGK++L
Sbjct: 181 KFGMIHGLSSLANIMSFGSLAMHSWYLAGKMDL 213


>GSVIVT01001769001 assembled CDS
          Length = 361

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 41/229 (17%)

Query: 5   TRFLAAVAFLAIGVIFSPETFGSKSVSQLSTYLKLAHLLSFSTAFGAALWVTFIGGIIMF 64
           T+    V +  +  + S +  GS +         + H+L F+TA+G  +WVTF    ++ 
Sbjct: 144 TKTKEKVVYDVVNYMLSTDAIGSLTC--------VIHILGFATAYGVRVWVTFFSSFVLA 195

Query: 65  KNLPRHQFGNLQSKMFPAYFWLVGVCCATSVGSFGYLHPWKSASTAEKYQLGXXX----- 119
             LP  QF  +QSK++P YF  +  C   ++   G+     + S  EK  LG        
Sbjct: 196 GALPNQQFAIVQSKIYPFYFKTMASCVGLAL--LGH-----ALSQGEKVLLGKPDLFQGH 248

Query: 120 ---XXXXXXXXXXXVFTPMTIEMMRQRHKVEREENIGTE-------------VGWSKNQ- 162
                            P   ++M +R +VE EE  G E              G S  Q 
Sbjct: 249 ALLATLHIILINLLYLEPRATKVMFERIRVENEERKGQESSRVEPGKEGEPTTGASDPQV 308

Query: 163 ----EAAKTNPKLAAMNKKFGMIHGFSSLANIMSFGGLAMHSWYLAGKL 207
               +    N ++  +N+    ++ +SSL NI++   L +H  YLA +L
Sbjct: 309 MGRLDQETVNNQILELNEMLKKLNAYSSLLNILTLMVLKLHLVYLAHRL 357


>GSVIVT01001772001 assembled CDS
          Length = 366

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 33/201 (16%)

Query: 29  SVSQLSTYLKLAHLLSFSTAFGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFWLVG 88
           S   + +   + H+L F+TA+G  +WVTF    ++   LP  QFG +QSK++P YF ++ 
Sbjct: 93  STDAIGSLTCVIHILGFATAYGVCVWVTFFSSFVLAGALPNQQFGIVQSKIYPFYFKIMA 152

Query: 89  VCCATSVGSFGYLHPWKSASTAEKYQLG--------XXXXXXXXXXXXXXVFTPMTIEMM 140
            C   ++   G+     + S  EK  LG                         P   ++M
Sbjct: 153 SCVGLAL--LGH-----ALSQGEKVLLGKPDLFQGHALLATLHIILINLLYLEPRATKVM 205

Query: 141 RQRHKVEREENIGTE-------------VGWSKNQ-----EAAKTNPKLAAMNKKFGMIH 182
            +R +VE EE  G E              G S  Q     +    N ++  +N+    ++
Sbjct: 206 FERIRVENEERKGQESSRVEPGKEGEPTTGASGPQVMGRLDQETVNNQILELNEMLKKLN 265

Query: 183 GFSSLANIMSFGGLAMHSWYL 203
            +SS  NI++   L +H  YL
Sbjct: 266 AYSSFLNILTLMVLKLHLVYL 286