Jatropha Genome Database

JcCA0152411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.10 - phase: 0 /partial
         (958 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028102001 assembled CDS                                       171   1e-42
GSVIVT01036474001 assembled CDS                                        79   9e-15
GSVIVT01008809001 assembled CDS                                        64   3e-10

>GSVIVT01028102001 assembled CDS
          Length = 390

 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 97/125 (77%)

Query: 833 PIEGGGQDINQPREPLGKTMVKSDKVSLKVKQKSWKNNPNCTPVREVSKQVKTEPVWFIL 892
           PI  G ++ +Q ++  GK+ + S++  +   +   K + + TPV + S  +KTEP WFIL
Sbjct: 15  PIGDGDRNTSQRKQQTGKSAIASNRAPVTTTKNFAKIDADLTPVEKASNILKTEPAWFIL 74

Query: 893 SGHKLQRKEFQQVIRRLKGKVCRDSHQWSYQATHFITPDPIRRTEKFFAAAASGRWILKT 952
           SGHKLQRKEFQQVI+RLKG+ CRDSH WSYQATHFI PDPIRRTEKFFAAAA+GRWILKT
Sbjct: 75  SGHKLQRKEFQQVIKRLKGRSCRDSHHWSYQATHFIVPDPIRRTEKFFAAAAAGRWILKT 134

Query: 953 DYLTA 957
           DYLTA
Sbjct: 135 DYLTA 139


>GSVIVT01036474001 assembled CDS
          Length = 475

 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 111 LIMCLTGYQRQDRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKIKL 170
           +I  ++GY   +R +++ ++S  GA++   + +  +THL+C+KFEG KY LA K K + +
Sbjct: 4   IIATVSGYHGVERSNLIKLISQTGAKYVGTM-SRSITHLVCWKFEGRKYSLAKKFKTL-I 61

Query: 171 VNHRWLEDCLRDWELLPEDNY-NKSGYEMEMMEAEAKDSEEDVEDITVK 218
           VNHRW EDC++  + LPE++Y  +SG E+  +  E     E    +T K
Sbjct: 62  VNHRWFEDCIKAGKRLPENSYLLQSGQEVGPLSLEVPLVSEKANPLTKK 110


>GSVIVT01008809001 assembled CDS
          Length = 952

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 6/186 (3%)

Query: 8   SKTFLGVRFVL-FGFDSIHERQVRAKLLNGGGVDAGQYSQSCSHLIVDKIVYDDPLCVAA 66
           S+ F G +F     F      ++   +  GGG     + +   H +V+      P  V A
Sbjct: 541 SRVFKGKQFRFSHSFPEDRRAEIVQWVNQGGGDVVDDWCKQNVHFVVECHGALLPKSVNA 600

Query: 67  RNDGKTLVTALWVDHSCDIGMAVDATS-IMYRPPRDLNGIPGAKHLIMCLTGYQRQDRDD 125
                T V++ W+    + G  +D +S I+Y P      +PG + L  C++ Y+ +DR  
Sbjct: 601 SQ--TTHVSSHWIRSCLEDGCLLDVSSHILYSPLPCQIPLPGFEKLRFCVSQYEEKDRLL 658

Query: 126 IMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKIKLVNHRWLEDCLRDWEL 185
           +  +  ++GA+F + L   KVTHL+C    G KYE A K   IK V   W+ +C++   +
Sbjct: 659 LRNLCFVLGAKFVEKL-TKKVTHLLCKFTGGPKYEAACKW-GIKAVTSEWIYECIKQNGV 716

Query: 186 LPEDNY 191
           +  D++
Sbjct: 717 VYVDSF 722