Jatropha Genome Database

JcCA0152091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152091.10 - phase: 0 
         (223 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012083001 assembled CDS                                       340   5e-94
GSVIVT01006720001 assembled CDS                                        97   8e-21
GSVIVT01023826001 assembled CDS                                        62   3e-10

>GSVIVT01012083001 assembled CDS
          Length = 368

 Score =  340 bits (871), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 163/199 (81%), Positives = 174/199 (87%), Gaps = 16/199 (8%)

Query: 7   TDKMSEAAILEVVRKNFGDHLILGEEGGVVGDTLSDYLWCIDPLDGTTNFAHGYPSFAVS 66
           TDKMSEAAILEVVRKNFGDHLILGEEGG++GDT SDYLWCIDPLDGTTNFAH YPSFAVS
Sbjct: 121 TDKMSEAAILEVVRKNFGDHLILGEEGGLIGDTSSDYLWCIDPLDGTTNFAHCYPSFAVS 180

Query: 67  VGVLYRGHPTAAAVVEFVGGHMAWNTRLFSATAGGGAFCNGQKIYVSQTDKVERSLLVTG 126
           VGVL+RG P AAAVVEFVGG M WNTR+FSAT GGGAFCNGQKI+ SQTD VE+SLLVTG
Sbjct: 181 VGVLFRGKPAAAAVVEFVGGPMCWNTRIFSATTGGGAFCNGQKIHASQTDLVEQSLLVTG 240

Query: 127 FGYDHDDAWATNIELFKEYTDISRVLLSIFLFQFARVSDSGVRRLGAAAVDMCHVALGIV 186
           FGY+HDDAWATNI+LFKE+TD+SR                GVRRLGAAAVDMCHVALGIV
Sbjct: 241 FGYEHDDAWATNIDLFKEFTDVSR----------------GVRRLGAAAVDMCHVALGIV 284

Query: 187 EAYWEYRLKPWDMAAGVLV 205
           EAYWEYRLKPWDMAAGVL+
Sbjct: 285 EAYWEYRLKPWDMAAGVLI 303


>GSVIVT01006720001 assembled CDS
          Length = 297

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 25/204 (12%)

Query: 6   RTDKMSEAAILEVVRKNFGDHLILGEEGGVVGDTLS---DYLWCIDPLDGTTNFAHGYPS 62
            TDK  E  I   +++++ +H ++GEE      T+       W +DPLDGTTNF HG+P 
Sbjct: 46  ETDKACEDLIFNHLQQHYPEHKLIGEETTAACGTMELTDSPTWIVDPLDGTTNFVHGFPF 105

Query: 63  FAVSVGVLYRGHPTAAAVVEFVGGHMAWNTRLFSATAGGGAFCNGQKIYVSQTDKVERSL 122
             VS+G+     P    V      +      LF+A  G GAF NG+ I VS   ++ +SL
Sbjct: 106 VCVSIGLTIGKVPAVGVV------YNPILDELFTAIRGKGAFLNGKPIKVSSQTELVKSL 159

Query: 123 LVTGFGYDHDDAWATNIELFKEYTDISRVLLSIFLFQFARVSDSGVRRLGAAAVDMCHVA 182
           L T  G   D          K   D +   ++  LF+        +R  G+ A+++C +A
Sbjct: 160 LATEVGTKRD----------KSTVDATTNRINGLLFEV-----RSLRMSGSCALNLCGIA 204

Query: 183 LGIVEAYWEYRL-KPWDMAAGVLV 205
            G ++ ++E     PWD+A G L+
Sbjct: 205 CGRLDLFYELGFGGPWDVAGGALI 228


>GSVIVT01023826001 assembled CDS
          Length = 286

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 11/134 (8%)

Query: 8   DKMSEAAILEVVRKNFGDHLILGEEGG-VVGDTLSDYLWCIDPLDGTTNFAHGYPSFAVS 66
           D+ +E +++ ++ ++F  H I GEE G    +  +DY+W +DP+DGT +F  G P F   
Sbjct: 64  DQAAEESMVSILLESFPSHAIYGEENGWRCKEKFADYVWVLDPIDGTKSFITGKPLFGTL 123

Query: 67  VGVLYRGHPTAAAVVEFVGGHMAWNTRLFSATAGGGAFCNGQKIYVSQTDKVERSLLVTG 126
           + +L++G P    + + V          +   +G     NGQ++      K+ ++ L T 
Sbjct: 124 IALLHKGRPILGIIDQPV------LRERWIGMSGRKTTLNGQEVATRDCAKLAQAYLYTT 177

Query: 127 ----FGYDHDDAWA 136
               F  D +DA+A
Sbjct: 178 SPHLFSGDAEDAFA 191