Jatropha Genome Database

JcCA0152031.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.30 + phase: 0 
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013394001 assembled CDS                                       250   3e-67

>GSVIVT01013394001 assembled CDS
          Length = 198

 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/184 (66%), Positives = 143/184 (77%)

Query: 1   MESIVKKYQQRFRKVREEMDKWDHLQSRLLSQFINASSIISRLQVIRDSNNYGNLSGVDG 60
           ME +VKKYQQ+FRKVR+E  +WD LQSRLLSQF NASSII RLQ I++S NYG L  +DG
Sbjct: 1   MEGMVKKYQQKFRKVRDETKRWDELQSRLLSQFRNASSIIERLQSIQNSKNYGTLKCIDG 60

Query: 61  IVDAVLRKQMDSLETILLSMNKTLEDFRSIVLFLEKMYKDGRQLVKGGPNQLTTKQLQQR 120
           I DAVLRKQM+SLETILLS+ KTL++F  IVL LEK+ +DGRQLVKGG  +LT KQLQQR
Sbjct: 61  IGDAVLRKQMESLETILLSLKKTLKEFHGIVLSLEKIVRDGRQLVKGGSVKLTMKQLQQR 120

Query: 121 VGVKPCLADCLDGLMILHDMHRSEYXXXXXXXXXXXXXXXXPSSGDLAALQQLMVDQPNI 180
           +GVKP LADCLDGL +LH+MH+SEY                PS+ DL AL QL+VDQPNI
Sbjct: 121 IGVKPSLADCLDGLSLLHEMHQSEYLLKSSVVSALSTLTLKPSASDLGALHQLLVDQPNI 180

Query: 181 PKEE 184
           PKEE
Sbjct: 181 PKEE 184