Jatropha Genome Database

JcCA0152031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.20 - phase: 0 
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013393001 assembled CDS                                       214   2e-56

>GSVIVT01013393001 assembled CDS
          Length = 230

 Score =  214 bits (546), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 137/199 (68%), Gaps = 16/199 (8%)

Query: 40  NVLRFLDSMDSYLTLFDSLSHTLRQGWLELAGARHSMGASRINSALLDLKVHSASTLLQV 99
           NV+ FLDSMD+YLTL DSLS TLRQGWLELA ARHSMGASRI+S+L DLK+HSA+T L+V
Sbjct: 24  NVVTFLDSMDAYLTLIDSLSSTLRQGWLELASARHSMGASRISSSLFDLKLHSAATSLRV 83

Query: 100 SEGH-DSMEEQPHFILRKWGSLD----CSRYQNSKEGELQAKPGSPRLRQRGNSQVSEE- 153
           +E   DS   QPHF L KW S D    CS        ELQ K  S +LR RG SQ  E  
Sbjct: 84  TEDDVDSKMNQPHFTLCKWASSDNGKCCSGEAKFDGDELQKKSVSSQLRYRGTSQFDEPQ 143

Query: 154 --------ITSPKQ--AALKVDDQVQKERSRSLSVFGTLVSPKLRDAQLSFETALETIVE 203
                     SP    + L +D  VQK+R +SLSVFGTLVSPKLR AQ SFETALETIVE
Sbjct: 144 EIQEKSPTCKSPTSNGSPLSLDSPVQKQRHKSLSVFGTLVSPKLRAAQFSFETALETIVE 203

Query: 204 IANMRSEMLSAFDGVNKEL 222
           IANMRS MLSAFD V K++
Sbjct: 204 IANMRSSMLSAFDQVQKDI 222