Jatropha Genome Database

JcCA0152031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.10 + phase: 0 /pseudo/partial
         (314 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013392001 assembled CDS                                       239   1e-63
GSVIVT01023872001 assembled CDS                                       141   4e-34

>GSVIVT01013392001 assembled CDS
          Length = 996

 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/257 (54%), Positives = 171/257 (66%), Gaps = 24/257 (9%)

Query: 1   MERGGSADGILQVRADRIQSDLDELMKGFKLNVARDMGXRXXXXXXXXXPIGWQPGIQEG 60
           ME+GGSADGILQVRADRIQSDL+EL+K    +  +  G           PIGW+PG QEG
Sbjct: 642 MEQGGSADGILQVRADRIQSDLEELIKALT-DRCKKHGLDVKSTAIIELPIGWEPGFQEG 700

Query: 61  AAVWDEEWDKFEDEG--FANDLMLDMKN-VSAPNSKSTIQDGSPTHDSLSNGDDKSGNFS 117
           AA+WDE+WDKFEDEG  FA D  +D++N V +P SKST           S   D + +F 
Sbjct: 701 AAIWDEDWDKFEDEGLSFAKDCAIDVQNGVGSPKSKST-----------SIQKDNASSFG 749

Query: 118 RVDGHGIEGESVYSHSEDELARSPQSSLAGRNALGSPSKAFSDV-FAKSTDADAETHRSF 176
               HGIE ES Y+HSED+LARSP  S  GR +L SPS+  S+  F KS++AD E HRSF
Sbjct: 750 E---HGIENESAYTHSEDDLARSPPGSPGGRTSLESPSQELSNNHFRKSSEADTEIHRSF 806

Query: 177 DESTW-GAFDTHDDTDSVWGFNPASTKDSDSDKHR--DFFGIDDFGIKPIRTGSLSSESI 233
           DE  W  +FD +DDTDS+WGFNP++TKD DSDKHR  D FG  + GI PIRT S   +  
Sbjct: 807 DEPNWEPSFDHNDDTDSIWGFNPSTTKDFDSDKHRENDIFGSGNLGINPIRTES-PHDDP 865

Query: 234 FQKKSPF-FEDSVAGSP 249
           FQ+KSPF FEDSV  +P
Sbjct: 866 FQRKSPFSFEDSVPSTP 882


>GSVIVT01023872001 assembled CDS
          Length = 875

 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/262 (39%), Positives = 133/262 (50%), Gaps = 33/262 (12%)

Query: 1   MERGGSADGILQVRADRIQSDLDELMKGFKLNVARDMGXRXXXXXXXXXPIGWQPGIQEG 60
           ME  GSAD  +QVRADRIQSDLDEL+K       +  G           P GWQ GIQEG
Sbjct: 541 MEENGSADESIQVRADRIQSDLDELVKALN-ERCKKYGLYVKPTTLVELPFGWQLGIQEG 599

Query: 61  AAVWDEEWDKFEDEG--FANDLMLDMKNVSAPNSKSTIQDGSPTHDSLSNGDDKSGNFSR 118
           AA WDE+WDKFE+EG  F  +L LD++N  AP          P   S+    +K+     
Sbjct: 600 AADWDEDWDKFEEEGYVFVKELTLDVQNAIAP----------PKPKSMPVDKEKAST--- 646

Query: 119 VDGHGIEGESVYSHSEDELARSPQSSLAGRNALGSPSKAFSDVFAKSTDAD-------AE 171
                 E  +  S S D  +  P S     +    P    +   AK T +D         
Sbjct: 647 -----AETPTAASSSVDVKSEDPPSMEFLDSHFFKPFSEDASPHAKDTQSDYGGADSFLS 701

Query: 172 THRSFDESTWGAFDTHDDTDSVWGFNP-ASTKDSDSDKHRD--FFGIDDFGIKPIRTGSL 228
             +SFDE TWG FDT+DD +S+WG N   +T   D ++H +  FFG D+F +KPIRT S 
Sbjct: 702 GDKSFDEPTWGKFDTNDDMESIWGMNSIGATSKMDHERHTENYFFG-DEFDLKPIRTESS 760

Query: 229 SSESIFQKKSPF-FEDSVAGSP 249
            +   F KKS F F+DSV  +P
Sbjct: 761 QASGSFPKKSTFTFDDSVPSTP 782