Jatropha Genome Database

JcCA0151951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151951.20 - phase: 0 
         (260 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007971001 assembled CDS                                       232   1e-61

>GSVIVT01007971001 assembled CDS
          Length = 447

 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 144/213 (67%), Gaps = 31/213 (14%)

Query: 45  EIPLIETSEIPPVTTEPEGSSGYVEFLKPDDVSISSIRAKFVPFFRGSQKMLLLHKNFIL 104
           E P+ E+ E+   TT  +    Y  FL P +VS++SI                       
Sbjct: 263 EKPVTESLEMLSTTTASQDCCDYAGFLDPAEVSVASI----------------------- 299

Query: 105 QLNCPHLRVRFGLSTKFSDHAGRPRLSFVVDASPSLCGVLDACDNIAQQSYGESGSSSDW 164
                   +RFG+ST+F D AGRPRLSFVVD SPSLC VLDACD +A +   +SGSSS+W
Sbjct: 300 --------MRFGISTRFVDPAGRPRLSFVVDGSPSLCQVLDACDQLAYKLSVDSGSSSEW 351

Query: 165 RPVVNRKPGYLNYPTARMHIPTIVNGEVAQYATEIYQKDPSGTTQKLVFSRFDAAELDTW 224
           RPVV RK G+LN PT R+ IPT+ NG++A YATEIYQKDPSGTTQ+L+FSRFDAAELDT 
Sbjct: 352 RPVVIRKTGFLNTPTIRLSIPTVTNGDIAIYATEIYQKDPSGTTQRLIFSRFDAAELDTL 411

Query: 225 FSPGTHIDAYFSLDTYDYQQSAGIRLVAKKLFI 257
           F PGT +D YF+LD YDYQQ+AGI+LVAKKL I
Sbjct: 412 FVPGTLVDTYFALDPYDYQQNAGIKLVAKKLII 444