Jatropha Genome Database

JcCA0151751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151751.20 - phase: 0 
         (232 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034360001 assembled CDS                                       281   2e-76
GSVIVT01024250001 assembled CDS                                       275   1e-74
GSVIVT01033018001 assembled CDS                                       156   8e-39

>GSVIVT01034360001 assembled CDS
          Length = 419

 Score =  281 bits (718), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/232 (59%), Positives = 163/232 (70%), Gaps = 4/232 (1%)

Query: 5   FLDAAGYLNFSIQHVLPRFPPDIRKDLPLDLGEGVLRALCLQALGQGVDLQLGMAIDSVK 64
           FL AAGYL+F+IQHVLP+FPP++RKDLPLDL EGVLRALCLQAL QGVD+QLGMAIDSVK
Sbjct: 183 FLKAAGYLDFAIQHVLPQFPPELRKDLPLDLAEGVLRALCLQALSQGVDIQLGMAIDSVK 242

Query: 65  ATLAVKRRLACEMVKYWHQAQESIVDLPLANGWGEKHKLFIQWXXXXXXXXXXXXHXXXX 124
           AT AVKRRLACEMV YWHQAQ++I + PLAN WGEKHKLF+ W            H    
Sbjct: 243 ATTAVKRRLACEMVTYWHQAQQTITNFPLANEWGEKHKLFVTWKYIESKVAAYYYHGLIL 302

Query: 125 XXXXXXXSTEMXXXXXXXXXMLWHGSRKACESFHRNPPVSRNPILWGTSKFLSEKIPRDK 184
                  S  M              S+KACE+F+  PP+SRNP +WGT K+L EK P+D 
Sbjct: 303 EEGNSERSHAMAATALQAADEFLRESKKACEAFNEAPPLSRNPPVWGTIKYLLEKFPKDA 362

Query: 185 SS----NEDQHNHEMILRTAPALPEFALSLEPDEYQLPAVDPSWNGHIQSQD 232
           SS     +D ++HE I++ APALPEFALSL+PDEY+ P VDPSWN  +Q  +
Sbjct: 363 SSKVKEKQDPYSHERIMQMAPALPEFALSLKPDEYRFPPVDPSWNNELQGSN 414


>GSVIVT01024250001 assembled CDS
          Length = 426

 Score =  275 bits (703), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/228 (57%), Positives = 164/228 (71%), Gaps = 4/228 (1%)

Query: 5   FLDAAGYLNFSIQHVLPRFPPDIRKDLPLDLGEGVLRALCLQALGQGVDLQLGMAIDSVK 64
           FL AAGYL+ +++HVLP+   ++R++LP+DL EGVLRALCLQALGQGVD+QLGMAIDS K
Sbjct: 184 FLKAAGYLDCAVKHVLPQLSSELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAIDSTK 243

Query: 65  ATLAVKRRLACEMVKYWHQAQESIVDLPLANGWGEKHKLFIQWXXXXXXXXXXXXHXXXX 124
           ATLAVKRRLACEMVKYW QAQ++I++LPL NGWGEKHKLF++W            H    
Sbjct: 244 ATLAVKRRLACEMVKYWQQAQDNIMNLPLTNGWGEKHKLFVKWKYVEAKATAYYYHGLIL 303

Query: 125 XXXXXXXSTEMXXXXXXXXXMLWHGSRKACESFHRNPPVSRNPILWGTSKFLSEKIPRDK 184
                  S  M              S++ACE+F+  PP+SRNP LWGT K+LSEKIP+D 
Sbjct: 304 DEGNTEKSHGMAVAALQAADEYLKESKRACEAFNMAPPLSRNPPLWGTMKYLSEKIPKDT 363

Query: 185 SS----NEDQHNHEMILRTAPALPEFALSLEPDEYQLPAVDPSWNGHI 228
           SS    N D ++H+ I+ TAP LP+FAL+L+PD+YQLP VDPSWN +I
Sbjct: 364 SSKVRINRDLYSHQRIMETAPQLPDFALALKPDDYQLPPVDPSWNDNI 411


>GSVIVT01033018001 assembled CDS
          Length = 419

 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 5   FLDAAGYLNFSIQHVLPRFPPDIRKDLPLDLGEGVLRALCLQALGQGVDLQLGMAIDSVK 64
            L A+GYL F ++ VL    PDI++  P DL EGVL A+ +QALGQG +LQL +A++S K
Sbjct: 170 LLKASGYLEFCVRDVLAHLRPDIKRRFPKDLQEGVLEAMSIQALGQGTELQLSLAVESQK 229

Query: 65  ATLAVKRRLACEMVKYWHQAQESIVDLPLANGWGEKHKLFIQWXXXXXXXXXXXXHXXXX 124
           ATL+VKRRLACE + Y+ QA   +    +++G+G+KH LFI+W            H    
Sbjct: 230 ATLSVKRRLACEQMSYFSQAHYCLSGCDMSHGYGKKHLLFIKWKYLEAKAAAYYYHGLIL 289

Query: 125 XXXXXXXSTEMXXXXXXXXXMLWHGSRKACESFHRNPPVSRNPILWGTSKFLSEKIPRDK 184
                                L   S+K   SF    PV+R P L    K L +KIP   
Sbjct: 290 DKGNEPSCHVSAVCCFLAAEELLADSKKVFLSFCLAVPVTRAPPLCDAMKHLHQKIPDIA 349

Query: 185 SSNEDQHNH----EMILRTAPALPEFALSLEPDEYQLPAVDPSWN 225
                 + +    E  L+  P LPEF LSL PD+YQLP + P+WN
Sbjct: 350 LKKSQMYGYLLEQEKSLQVLPDLPEFQLSLRPDDYQLPEIHPAWN 394