Jatropha Genome Database

JcCA0151631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151631.10 + phase: 0 
         (389 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003838001 assembled CDS                                       234   6e-62
GSVIVT01015228001 assembled CDS                                       152   2e-37
GSVIVT01003478001 assembled CDS                                       131   7e-31
GSVIVT01014639001 assembled CDS                                       125   2e-29

>GSVIVT01003838001 assembled CDS
          Length = 302

 Score =  234 bits (596), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 174/268 (64%), Gaps = 6/268 (2%)

Query: 113 VEPESEIKEDP-WLKMHEEARLDVEQEPILSSYYFTSIFSQKSLERALASHLSIKLSNST 171
           +E    I  DP W  + EEA+L+ E+EPILSS+ + SI S   LE+ALA  L+ +L N T
Sbjct: 14  LEILDSIVGDPIWDAVREEAKLEAEKEPILSSFLYASILSHDCLEQALAFVLANRLHNLT 73

Query: 172 LPSSTLFDIFSGVLEQNKDIISAVKEDLRAVRERDPACISYVHCFLSFKGFLACQAHRIA 231
           L ++ L DI   V+  ++DI  A++ D++A ++RDP+C+S+    L  KG+ + Q++R+A
Sbjct: 74  LLATQLMDIIGKVILNDRDIQRAIRLDMQAFKDRDPSCLSHCSVLLYLKGYHSLQSYRVA 133

Query: 232 HTLWTQGRKVLALLIQNRVSEAFAVDIHPGAKIGQGILFDHATGLVVGETAVIGNNVSIL 291
           H LW  GRK LAL +Q+R+SE F VDIHP A+IG+ IL DHATG+V+GETAV+GN VS++
Sbjct: 134 HALWNHGRKELALALQSRISEVFGVDIHPAAQIGEEILLDHATGVVIGETAVVGNRVSLM 193

Query: 292 HNVTLGGTGKIGGDRHPKIGDGVLIGAGTCILXXXXXXXXXXXXXXSVVLKDVPPRTTAV 351
             VTLGG+GK  GDRHPK+  G LIGA   IL              S+VLKDVPP +   
Sbjct: 194 QGVTLGGSGKEIGDRHPKVAQGALIGASATILGNIKIGEGAMIAAGSLVLKDVPPHSMVA 253

Query: 352 GNPARLIGGKENPVKLDKMPSFTMDHTS 379
           G PARLIG        ++ PS TM H +
Sbjct: 254 GIPARLIGHVH-----EQDPSLTMKHDA 276


>GSVIVT01015228001 assembled CDS
          Length = 209

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/278 (35%), Positives = 135/278 (48%), Gaps = 84/278 (30%)

Query: 115 PESEIKEDP---WLKMHEEARLDVEQEPILSSYYFTSIFSQKSLERALASHLSIKLSNST 171
           P +E  ED    W ++  EAR D E EP L+SY +++I S  SLER+L+ HL  KL +ST
Sbjct: 13  PATESGEDEAWLWTQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSST 72

Query: 172 LPSSTLFDIFSGVLEQNKDIISAVKEDLRAVRERDPACISYVHCFLSFKGFLACQAHRIA 231
           L S+ L+D+F     ++ ++ SA   DLRA   RDPAC+S        +G L C      
Sbjct: 73  LLSTLLYDLFLDTFSKDAELRSATVADLRANHMRDPACVS--------RGLLTC------ 118

Query: 232 HTLWTQGRKVLALLIQNRVSEAFAVDIHPGAKIGQGILFDHATGLVVGETAVIGNNVSIL 291
            + W   R+                       +G+G               +IG   +IL
Sbjct: 119 -SRWISTRR---------------------RGLGRGFF-------------LIGAGATIL 143

Query: 292 HNVTLGGTGKIGGDRHPKIGDGVLIGAGTCILXXXXXXXXXXXXXXSVVLKDVPPRTTAV 351
            N+              KIG+G  IGAG                  SVVL DVP RTTAV
Sbjct: 144 GNI--------------KIGEGAKIGAG------------------SVVLIDVPARTTAV 171

Query: 352 GNPARLIGGKENPVKLDKMPSFTMDHTSHINDWSDYVI 389
           GNPARL+GGKE P + + +P  +MDHTS I++WSDY+I
Sbjct: 172 GNPARLVGGKEKPARHEDVPGESMDHTSFISEWSDYII 209


>GSVIVT01003478001 assembled CDS
          Length = 225

 Score =  131 bits (329), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 82/132 (62%), Gaps = 28/132 (21%)

Query: 230 IAHTLWTQGRKVLALLIQNRVSEAFAVDIHPGAKIGQGILFDHATGLVVGETAVIGNNVS 289
           +AH LW+QGR V+ALLIQ+RVSE                            TAVIG+NV+
Sbjct: 118 VAHKLWSQGRIVMALLIQSRVSE----------------------------TAVIGDNVT 149

Query: 290 ILHNVTLGGTGKIGGDRHPKIGDGVLIGAGTCILXXXXXXXXXXXXXXSVVLKDVPPRTT 349
           ILHNVTLGGTGK+ GDRHPK+GDGVLIGAGT +L              SVVLK+VPP TT
Sbjct: 150 ILHNVTLGGTGKVNGDRHPKVGDGVLIGAGTKVLGSIRVGDRAKIGAGSVVLKEVPPETT 209

Query: 350 AVGNPARLIGGK 361
           +VGNPARL   K
Sbjct: 210 SVGNPARLKKAK 221



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 20/120 (16%)

Query: 49  MAACVDKPRTDT----SQLSRDP--NRSKTDDSAYNYVKFFRPSFSDSISCKPICKNQIK 102
           MAAC+   RT T    S  S+D   ++ +  +S + + K  +PSF +  SC PI     K
Sbjct: 15  MAACIHNSRTSTEAAASPFSQDSADHQCQIRNSPW-FAKKCKPSFQNLFSCDPI-----K 68

Query: 103 TVHSRSLVEDVEPESEIKEDPWLKMHEEARLDVEQEPILSSYYFTSIFSQKSLERALASH 162
            V  ++  ED        +  WLK+ E+A  D+EQEPILS YY +SI    SLE AL +H
Sbjct: 69  RVRLQADKED--------DVLWLKIREQALCDMEQEPILSKYYCSSILQHDSLESALVAH 120


>GSVIVT01014639001 assembled CDS
          Length = 274

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 80/126 (63%), Gaps = 37/126 (29%)

Query: 207 PAC---------ISYVHCFLSFKGFLACQAHRIAHTLWTQGRKVLALLIQNRVSEAFAVD 257
           PAC          + VH  LS K   + + HR+AH LW+QGRK+LAL+IQNRVSEAFA  
Sbjct: 108 PACPCRRMAAKEFTQVHLILSHK---SLETHRVAHRLWSQGRKILALVIQNRVSEAFA-- 162

Query: 258 IHPGAKIGQGILFDHATGLVVGETAVIGNNVSILHNVTLGGTGKIGGDRHPKIGDGVLIG 317
                                  TAVIG++VSILHNVTLGGTGK+ GDRHPK+GDGVLIG
Sbjct: 163 -----------------------TAVIGDDVSILHNVTLGGTGKVSGDRHPKLGDGVLIG 199

Query: 318 AGTCIL 323
           AGTCIL
Sbjct: 200 AGTCIL 205