Jatropha Genome Database

JcCA0151501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151501.10 + phase: 0 
         (265 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033852001 assembled CDS                                       218   3e-57
GSVIVT01005049001 assembled CDS                                       181   4e-46
GSVIVT01025217001 assembled CDS                                       176   1e-44
GSVIVT01033673001 assembled CDS                                       160   5e-40
GSVIVT01005048001 assembled CDS                                       158   2e-39

>GSVIVT01033852001 assembled CDS
          Length = 279

 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/240 (45%), Positives = 148/240 (61%), Gaps = 5/240 (2%)

Query: 29  FGYSATNGPEKWGSLRPTYSQCSKGKSQSPINIIKNDSVADGDLKPLIRDYKXXXXXXXX 88
           F Y+   GP  WG L P + +C  GKSQSP++II N +  + +LKPL R+Y+        
Sbjct: 36  FSYAGQMGPANWGKLHPQFQECVVGKSQSPVDIITNKTELNPNLKPLSRNYRPGKSTLVN 95

Query: 89  XXXXXGINFERSGAAGQLSLDGKNYQLANMHWHSPSEHQINEFSYPLELHLVHQAADGAL 148
                G+ F+     G L +DGKNY L  MHWHSPSEH+I+   YP ELHLVH+  DG +
Sbjct: 96  NGFNVGVRFDED--VGVLLVDGKNYSLKQMHWHSPSEHRIDGLQYPAELHLVHRTDDGNI 153

Query: 149 SVVAILYEDGPEDPFTAKIQDGLTKLAQ---AGNSSKGVPIGLLDIEPLKEKASEYFTYT 205
           +VV ILY+ G  DP  +K+++ L +LA+   A N    V +G +D + ++     Y+ Y 
Sbjct: 154 AVVGILYQYGDADPLLSKLKNKLDELAKDVCASNEQSQVSLGTMDTKLIRRNTRRYYRYM 213

Query: 206 GSLTTPPCSENVLWNVLAKVATVSKAQVEALKAPLGEAYKQNSRPIQPLNDRKVSLYKQV 265
           GSLTTPPCSE V W++L K+  +SK QV ALKAPL    K NSRP+QPLN R++ LY + 
Sbjct: 214 GSLTTPPCSEKVAWHILGKIRDISKDQVAALKAPLNSDCKDNSRPLQPLNGRRIQLYDET 273


>GSVIVT01005049001 assembled CDS
          Length = 271

 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 135/230 (58%), Gaps = 6/230 (2%)

Query: 33  ATNGPEKWGSLRPTYSQCSKGKSQSPINIIKNDSVADGDLKPLIRDYKXXXXXXXXXXXX 92
           +  GPEKWG+++  +  C KGK QSPI++         D   L R Y+            
Sbjct: 38  SETGPEKWGTIKAEWKTCGKGKRQSPIDLRNRRVSIFPDFGQLKRKYRPAHAVLKNRGHD 97

Query: 93  XGINFERSGAAGQLSLDGKNYQLANMHWHSPSEHQINEFSYPLELHLVHQAADGALSVVA 152
             +  E  G AG++ L G +++L  +HWH+PSEH +N  S+ +ELHLVH++A G ++V+ 
Sbjct: 98  VAV--EWKGNAGKIKLHGVHFKLEQLHWHTPSEHTVNGTSFQMELHLVHKSARGKIAVIG 155

Query: 153 ILYEDGPEDPFTAKIQDGLTKLAQAGNSSKGVPIGLLDIEPLKEKASEYFTYTGSLTTPP 212
             ++ GP DPF AK+ D +T +  AG       IG++D   +K    +Y+ Y GSLTTPP
Sbjct: 156 KTFKLGPPDPFLAKMIDHVTGIP-AGEEKD---IGIVDANDIKHWGRKYYRYIGSLTTPP 211

Query: 213 CSENVLWNVLAKVATVSKAQVEALKAPLGEAYKQNSRPIQPLNDRKVSLY 262
           C+E V+W +  KV TVSK QVE+L+  + + ++ N+RP Q LN R V LY
Sbjct: 212 CTEGVIWTISKKVNTVSKEQVESLRRVVHDGHEGNARPAQRLNGRPVWLY 261


>GSVIVT01025217001 assembled CDS
          Length = 274

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 6/237 (2%)

Query: 29  FGYS--ATNGPEKWGSLRPTYSQCSKGKSQSPINIIKNDSVADGDLKPLIRDYKXXXXXX 86
           F Y   +  GP+KWG +   +S C  G  QSPI+++         L  L R YK      
Sbjct: 35  FDYEKGSDKGPDKWGEIHEEWSTCKHGNMQSPIDLLHERVQVVSHLGRLQRSYKPSQATL 94

Query: 87  XXXXXXXGINFERSGAAGQLSLDGKNYQLANMHWHSPSEHQINEFSYPLELHLVHQAADG 146
                   +++E  G AG + ++G  Y+L   HWHSPSEH +N   + LELH++H+   G
Sbjct: 95  KNRGHDMKLSWE--GDAGSIQINGTKYELKQCHWHSPSEHTVNGKRFDLELHMLHETPSG 152

Query: 147 ALSVVAILYEDGPEDPFTAKIQDGLTKLAQAGNSSKGVPIGLLDIEPLKEKASEYFTYTG 206
             SVV I+Y+ G  D F + + D L  L+ + +  + V  G++D   +K  + +Y+ Y G
Sbjct: 153 KTSVVGIMYKIGRADSFLSTLTDHLEALSDSSDQERDV--GVVDPRHIKIGSRKYYRYMG 210

Query: 207 SLTTPPCSENVLWNVLAKVATVSKAQVEALKAPLGEAYKQNSRPIQPLNDRKVSLYK 263
           SLTTPPC+E+V+W ++ KV TV++ QV  L+  + +    N+RPIQP+N R V  Y+
Sbjct: 211 SLTTPPCTEDVIWTIVNKVRTVTREQVNLLRVAVHDDSGSNARPIQPINRRSVHFYR 267


>GSVIVT01033673001 assembled CDS
          Length = 270

 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 36  GPEKWGSLRPTYSQCSKGKSQSPINIIKNDSVADGDLKPLIRDYKXXXXXXXXXXXXXGI 95
           GP+ WG L+  ++ C+ G  QSPI++          L  L R+YK              I
Sbjct: 46  GPKHWGELKEEWAACNNGDLQSPIDLSNQRVKVIPKLGDLKRNYKLCNATVKNRGHD--I 103

Query: 96  NFERSGAAGQLSLDGKNYQLANMHWHSPSEHQINEFSYPLELHLVHQAADGALSVVAILY 155
           + +  G AG + ++G  Y+L   HWH+PSEH IN   Y LELH+VH + D  ++VV ++Y
Sbjct: 104 SLQWVGDAGSIRINGTEYKLQQGHWHAPSEHSINGRRYDLELHMVHVSPDNNIAVVGLIY 163

Query: 156 EDGPEDPFTAKIQDGLTKLAQAGNSSKGVPIGLLDIEPLKEKASEYFTYTGSLTTPPCSE 215
           + G  D F +K+   +T +A      K   +G++    +K    +Y+ Y GSLT PPC+E
Sbjct: 164 KTGQPDKFLSKMMSNITSMADKMEQRK---MGVIHPGDIKMGGRKYYKYMGSLTVPPCTE 220

Query: 216 NVLWNVLAKVATVSKAQVEALKAPLGEAYKQNSRPIQPLNDRKVSLY 262
            V W +  K+ TVS+ QV+ L+  + +  + N+RP+QPLN R+V LY
Sbjct: 221 GVTWIINKKIRTVSREQVKQLRLAVHDYAEMNARPVQPLNLREVQLY 267


>GSVIVT01005048001 assembled CDS
          Length = 276

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 36  GPEKWGSLRPTYSQCSKGKSQSPINIIKNDSVADGDLKPLIRDYKXXXXXXXXXXXXXGI 95
           GP++WG + P +  C  G  QSPI+++        +L+ L RDYK              +
Sbjct: 47  GPKRWGQINPDWKACGNGAMQSPIDLLDARVQVLPNLEKLKRDYKPAPAVVKNRGHD--V 104

Query: 96  NFERSGAAGQLSLDGKNYQLANMHWHSPSEHQINEFSYPLELHLVHQAADGALSVVAILY 155
             E  G AG+++++G  ++L   HWHSPSEH  N   Y LELH++H ++D  ++V+ I Y
Sbjct: 105 TVEWKGYAGKININGTYFKLQQCHWHSPSEHTFNGSRYNLELHVIHLSSDEKIAVIGITY 164

Query: 156 EDGPEDPFTAKIQDGLTKLAQAGNSSKGVPIGLLDIEPLKEKASEYFTYTGSLTTPPCSE 215
           + G  DPF  ++   +  L           +G+++   +K  + +Y+ Y GSLT PPC+E
Sbjct: 165 KYGRADPFLTRMLRHIDSLPVGEEKE----LGIVNPGDIKFGSRKYYRYIGSLTVPPCTE 220

Query: 216 NVLWNVLAKVATVSKAQVEALKAPLGEAYKQNSRPIQPLNDRKVSLYK 263
            V+W +  KV T ++ QV AL+  + + Y+ N+RP Q ++ R V LYK
Sbjct: 221 GVIWTISKKVRTATREQVRALRKAVQDGYEANARPSQEVDGRTVLLYK 268