Jatropha Genome Database

JcCA0151491.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151491.20 - phase: 0 /partial
         (315 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024713001 assembled CDS                                       526   e-150

>GSVIVT01024713001 assembled CDS
          Length = 583

 Score =  526 bits (1355), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/309 (79%), Positives = 277/309 (89%), Gaps = 5/309 (1%)

Query: 1   GSPDLKAAREVADYLRTRHHELHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRK 60
           GSPDLKAA+EVADYL T HHE HFTVQ+GIDA+E+VIYHIETYDVTTIRASTPMFLMSRK
Sbjct: 271 GSPDLKAAKEVADYLGTVHHEFHFTVQDGIDAIEDVIYHIETYDVTTIRASTPMFLMSRK 330

Query: 61  IKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAW 120
           IKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFH+ETCRKIKAL+ YDCLRANKSTSAW
Sbjct: 331 IKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCRKIKALYQYDCLRANKSTSAW 390

Query: 121 GLEARVPFLDKDFINVAMSIDPEWKMIRRDLGRIEKWVLRNAFDDEKNPYLPKHILYRQK 180
           GLEARVPFLDK+FI VAM IDPEWKMI+ + GRIEKWVLR AFDDE+ PYLPKHILYRQK
Sbjct: 391 GLEARVPFLDKEFIKVAMDIDPEWKMIKPEQGRIEKWVLRRAFDDEEQPYLPKHILYRQK 450

Query: 181 EQFSDGVGYSWIDGLRDHANKQVTDAMLMNASFIYPENTPTTKEAYYYRAIFEKFFPKNA 240
           EQFSDGVGYSWIDGL+ HA++ VTD M++NAS I+P NTPTTKEAYYYR IFE+FFP+N+
Sbjct: 451 EQFSDGVGYSWIDGLKAHASQHVTDKMMLNASHIFPHNTPTTKEAYYYRMIFERFFPQNS 510

Query: 241 ARLTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAAVGVHEAAYEETANTKTA-----NL 295
           ARLTVPGG SVACSTAKAVEWD+AWS NLDPSGRAA+GVH +AY++   T +A      +
Sbjct: 511 ARLTVPGGASVACSTAKAVEWDSAWSNNLDPSGRAALGVHLSAYDQKLTTVSAANVPTKI 570

Query: 296 INGSPQTLK 304
           I+  P+ ++
Sbjct: 571 IDNMPRIME 579