Jatropha Genome Database

JcCA0151491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151491.10 + phase: 0 /partial
         (133 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027912001 assembled CDS                                       160   1e-40
GSVIVT01033921001 assembled CDS                                        58   1e-09

>GSVIVT01027912001 assembled CDS
          Length = 314

 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 92/116 (79%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           +VGD +GAVFGGL+E PL+PT KRKYQGTN  FVFT   G P +FRPTGANRYF LC +D
Sbjct: 197 IVGDMQGAVFGGLLECPLKPTAKRKYQGTNQAFVFTTIYGEPRLFRPTGANRYFYLCLND 256

Query: 61  FLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFVYGTKY 116
            LA+GGGG+FAL LD DLL+G+S   ET+GN CLA + +FE+K VELWGF + ++Y
Sbjct: 257 LLALGGGGNFALCLDEDLLSGTSGPCETFGNLCLAHNPEFELKNVELWGFTHSSQY 312


>GSVIVT01033921001 assembled CDS
          Length = 422

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           ++ D++G V+GG    P        + G   +F+F   P    IF+PTGAN     C+ +
Sbjct: 269 IIKDKEGYVYGGYASQPWE--RHGDFYGDMKSFLFQIFP-KASIFKPTGANSNIQWCAVN 325

Query: 61  FLA------IGGGG---HFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFV 111
           F +      IG GG   HF L+L      G +    T+G+PCL+       + +E WG V
Sbjct: 326 FSSDSIPNGIGFGGRVNHFGLFLSASFDEGQTFTCTTFGSPCLSNINRIHPEVIECWGVV 385