Jatropha Genome Database

JcCA0151401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151401.20 - phase: 1 /pseudo/partial
         (347 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003198001 assembled CDS                                       170   7e-43
GSVIVT01003200001 assembled CDS                                       169   2e-42
GSVIVT01038076001 assembled CDS                                        74   7e-14
GSVIVT01038063001 assembled CDS                                        74   1e-13
GSVIVT01016843001 assembled CDS                                        71   6e-13
GSVIVT01010161001 assembled CDS                                        69   3e-12
GSVIVT01016837001 assembled CDS                                        67   1e-11
GSVIVT01014322001 assembled CDS                                        66   2e-11
GSVIVT01010160001 assembled CDS                                        59   4e-09
GSVIVT01017697001 assembled CDS                                        57   9e-09
GSVIVT01016826001 assembled CDS                                        49   3e-06

>GSVIVT01003198001 assembled CDS
          Length = 340

 Score =  170 bits (431), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 156/286 (54%), Gaps = 18/286 (6%)

Query: 69  VIKTSVLSKRWQYIWTHVPNLTFELGESYKSVRQFASFVDKALIQYASPKIKNFAIDIDH 128
           V+ TS+LSKRWQ++WT VPNL F      +    F + +DK L+ + + +IK F ID  +
Sbjct: 4   VVATSILSKRWQFLWTMVPNLVFRFR---RRDEHFVNSIDKTLVLHQNSQIKKFLIDFTY 60

Query: 129 NGRWLSKLQPRIESWVRFATEREVEKLALD--LFEH-----DDWDHYTLPQFLYKNHWLR 181
                S+ Q  +  W+R AT + VE+L L   + +H      D+ H  LPQFLY N  + 
Sbjct: 61  Q----SQFQSSVNVWIRHATRKNVEELHLQFRVGQHIRSSPMDYAH-ALPQFLYANSSIV 115

Query: 182 ELKTTRCDYAIDGNVEWRSLKVLDIYESNLTDEVVENILSGSPMLESLKLHWCPRIHRID 241
           +L    C+      + W SLK L I    L D+++E ILSG P LESL+LH C  I+ ++
Sbjct: 116 KLSLWFCNIKPTWVISWPSLKTLSIGSVELCDDLIEEILSGCPALESLELHHCFGINSLN 175

Query: 242 VSSKCLKKLVIDGVAEGYXXXXXXXXXXXXXPYVEKLKILADWGKRKCKLMNVSSLVSVT 301
           ++S  LKKLVI+   +               P V+ L IL +   ++C++ NV SL   +
Sbjct: 176 ITSASLKKLVINRYWDS-SHSHHRSVLKISAPNVQSLGILGNMYTKECRVKNVPSLFDAS 234

Query: 302 LDFYLEVDKERGNKLYKYVKYQNLVRQLLEKVHHVKELKIGNWCIQ 347
           L+F  E+  + GN    Y  Y  +V +LL+ V+HVK L +G WCIQ
Sbjct: 235 LNF--ELAMQEGNPKDHYKLYHKVVMKLLKSVNHVKALTVGTWCIQ 278


>GSVIVT01003200001 assembled CDS
          Length = 452

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 175/320 (54%), Gaps = 29/320 (9%)

Query: 46  DRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQYIWTHVPNLTFELGESYKSVRQFAS 105
           DRIS L D +  HILSFLP  +  I+T VLSKR+ Y W   PNL F+    ++ +  F +
Sbjct: 35  DRISELPDLVLVHILSFLP-MDAAIRTGVLSKRFAYKWASTPNLVFDQDSEWE-IDDFIT 92

Query: 106 FVDKALIQY-ASPKIKNFAIDIDHNGRWL--SKLQPRIESWVRFATEREVEKLALDLFEH 162
           FV++AL+ +  + K++ F I +D   + +  S  +  +  W+RFAT + VEKL L   + 
Sbjct: 93  FVNRALLLHDPNCKVQKFTIYMDCMDQVIENSLQEDCVTLWLRFATRKGVEKLNLGFNDE 152

Query: 163 DD----WD------HYTLPQFLYKNHWLRELKTTRCDYAIDGNVEWRSLKVLDIYESNLT 212
           +D    W+       Y LPQF++++   R+L T  C++   G V W  LK L I  + L 
Sbjct: 153 EDPLQLWESRYDSYRYLLPQFIFRHSSFRKLATRFCNFVTYGVVSWAWLKSLSIGYAELN 212

Query: 213 DEVVENILSGSPMLESLKLHWCPRIHRIDVSSKCLKKLVI-----DGVAEGYXXXXXXXX 267
           +E + NIL GSP LE L+ H C    RI++ S+ LKKL I        AEG         
Sbjct: 213 EETIRNILMGSPALECLEFHRCHGFARINICSESLKKLSILEPWAPNDAEG------ETV 266

Query: 268 XXXXXPYVEKLKILADWGKRKCKLMNVSSLVSVTLDFYLEVDKERGNKLYKYVKYQNLVR 327
                P +  L++  +W K  C+L+++SSLV+  LD  +++  +  N  Y    Y N++R
Sbjct: 267 LEVSAPNIRSLELSGNWEK-MCRLLDMSSLVNAKLD--IQMMHQDRNFQYFSEDYSNMLR 323

Query: 328 QLLEKVHHVKELKIGNWCIQ 347
           ++L+ + HV+ L +G WC++
Sbjct: 324 EILKHLSHVENLTVGTWCLE 343


>GSVIVT01038076001 assembled CDS
          Length = 411

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 21/144 (14%)

Query: 43  ENEDRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQYIWTHVPNLTF----------E 92
           ++ DRIS L D++  HI+SFLP T+  + TSVLSKRW+Y+W  +PNL F           
Sbjct: 7   KSRDRISNLPDAVLCHIISFLP-TKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKP 65

Query: 93  LGESYKSVRQFASFVDKALIQYASPKIKNFAIDI-DHNGRWLSKLQPRIESWVRFATERE 151
           +G+S +S+  F +FVDK L+  +   I+ F +   DH      +L   + SW+  A ER 
Sbjct: 66  IGDSERSI-CFKNFVDKVLLHGSISCIRKFRLKCSDH------ELDSAVNSWICTALERN 118

Query: 152 VEKLALDLFEHDDWDHYTLPQFLY 175
           V++  LDL+   ++     P+F +
Sbjct: 119 VQE--LDLYFDTEYPIELPPKFFF 140


>GSVIVT01038063001 assembled CDS
          Length = 348

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 136/316 (43%), Gaps = 51/316 (16%)

Query: 43  ENEDRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQYIWTHVPNLTFE---------L 93
           E+ D IS L D L  HILSFLP T+  + TS+LSKRW+Y+W  VP L F+         L
Sbjct: 7   ESRDIISNLPDELLCHILSFLP-TKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTL 65

Query: 94  GESYKSVRQFASFVDKALIQYASPKIKNFAIDIDHNG--RWLSKLQPRIESWVRFATERE 151
            E  + +  F +FVD  L       IK F +    N    W  +L P             
Sbjct: 66  VELEERIIMFQNFVDGVLRHSEVSCIKKFRLGYRDNNLDNWGVELPPMF----FICKTLV 121

Query: 152 VEKLALDLFEHDDWDHYTLPQFLYKNHWLRELKTTRCDYAIDGNVEWRSLKVLDIYESNL 211
           V KL+  LF         +P  +    WL  LK           +  +S++  D      
Sbjct: 122 VVKLSCALF-------LDIPTTV----WLPSLKA----------LHLKSVEYSD------ 154

Query: 212 TDEVVENILSGSPMLESLKLHWCPRIHR--IDVSSKCLKKLVI----DGVAEGYXXXXXX 265
            D+ ++ +LSG P+LE L +    R ++  ++VS+  LK L I    DG A  Y      
Sbjct: 155 -DDSIQKLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQD 213

Query: 266 XXXXXXXPYVEKLKILADWGKRKCKLMNVSSLVSVTLDFYLEVDKERGNKLYKYVKYQNL 325
                  P +E L I  D+  +   + ++ SLV   +D   + ++   +     + Y   
Sbjct: 214 YKVVVDAPNLEYLSI-TDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGP 272

Query: 326 VRQLLEKVHHVKELKI 341
           + +LL ++ +VK L +
Sbjct: 273 IYELLGRISNVKCLSL 288


>GSVIVT01016843001 assembled CDS
          Length = 552

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 23/215 (10%)

Query: 43  ENEDRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQYI--WTHVPNLTFELGESYKSV 100
           E +DRIS L D +   ILS LP T+++ +TS+LSK W+ +  ++ +  L F+  + + S 
Sbjct: 35  EEQDRISYLPDDILIRILSLLP-TKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSR 93

Query: 101 RQ------FASFVDKAL------IQYASPKIKNFAIDIDHNGRWLSKLQPRIESWVRFAT 148
           R+      F + +D +L      +  A  +++    DI+            I+SW+  A 
Sbjct: 94  RKNFDVSSFINAIDSSLRLRQKDVSLARLQLRLHLNDIESESL--------IDSWIDAAL 145

Query: 149 EREVEKLALDLFEHDDWDHYTLPQFLYKNHWLRELKTTRCDYAIDGNVEWRSLKVLDIYE 208
           ER+V++L L L      + Y LP  ++    +  L   +C   I G+V+  +L+ L + +
Sbjct: 146 ERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGDVDLPALRKLCLRK 205

Query: 209 SNLTDEVVENILSGSPMLESLKLHWCPRIHRIDVS 243
               ++ +  ++S  P++E L +  C ++ ++ VS
Sbjct: 206 ILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVS 240


>GSVIVT01010161001 assembled CDS
          Length = 452

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 24/220 (10%)

Query: 46  DRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQYIWTHVPNLTFE-------LGESYK 98
           D IS L +++  +IL  LP   D + TS+LSK+W+Y W  +P+L  +       LG    
Sbjct: 43  DIISDLPNNIIENILMRLPIC-DAVGTSILSKKWRYKWLTLPHLVIDNALGKKLLGRQQS 101

Query: 99  SVRQFASFVDKALIQYASPKIKNFAIDIDHNGRWLSKLQPRIESWVRFATEREVEKLALD 158
           +  +  S V + L+ +  P +K F +++D    +       I+ W+ F +  ++++  L 
Sbjct: 102 AKNELVSAVYQVLLLHKGPIVK-FVLEVDELESY-----SDIDHWINFLSNHDIQEFTLS 155

Query: 159 LFEHDDWDHYTLPQFLYKNHWLRELKTTRCDY----AIDGNVEWRSLKVLDIYESNLTDE 214
                  +HY LP + +    LR LK   C +       G  +  SL++ DI    +  E
Sbjct: 156 ---RAKTEHYKLPSYFFTFLHLRHLKLRGCAFRPPPRFKGFSKLISLQLEDIL---MDAE 209

Query: 215 VVENILSGSPMLESLKLHWCPRIHRIDVSSKCLKKLVIDG 254
              +++S  P+LE L +        +++S+  LK     G
Sbjct: 210 TFGSLISSCPLLEQLTVSGYIPYDSLEISAPNLKSFSFTG 249


>GSVIVT01016837001 assembled CDS
          Length = 521

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 21/214 (9%)

Query: 43  ENEDRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQ--YIWTHVPNLTFELGESYKSV 100
           E +DRIS L D +   IL  LP T+DV ++S+LS+ W+    ++ +  L F+  +  +S 
Sbjct: 3   EEQDRISHLPDDILIRILGLLP-TKDVARSSLLSQAWRKLSPFSSLSLLMFQCPDFLESC 61

Query: 101 RQ------FASFVDKALIQYASPKIKNFA-----IDIDHNGRWLSKLQPRIESWVRFATE 149
           R+      F + +D +L     PK  N A     +D+D       + +  I+SW+  A E
Sbjct: 62  RKNTDVSSFINAIDSSL--RLRPKDVNLARLRLHLDLDD-----IESESLIDSWIDAALE 114

Query: 150 REVEKLALDLFEHDDWDHYTLPQFLYKNHWLRELKTTRCDYAIDGNVEWRSLKVLDIYES 209
           R+V++L L L        Y LP  ++    +  L   +C   I G+++  +L+ L + + 
Sbjct: 115 RKVKELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEICGDIDLPALRKLCLRQI 174

Query: 210 NLTDEVVENILSGSPMLESLKLHWCPRIHRIDVS 243
              ++ +  ++S  P++E L +  C  + ++ VS
Sbjct: 175 RCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVS 208


>GSVIVT01014322001 assembled CDS
          Length = 402

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 32/215 (14%)

Query: 44  NEDRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQYIWTHVPNLTFELGESYKSVRQF 103
            ED +S L D +   ILS L +  +   TSVLS+RW+Y+WT+   L F+     K VR+ 
Sbjct: 20  GEDLLSELPDEILISILSRL-TLREAAATSVLSQRWRYLWTYTSRLNFD-SVVNKIVRRS 77

Query: 104 ASF------------------VDKALIQYASPK-IKNFAIDIDHNGRWLSKLQPRIESWV 144
            SF                  V K L +Y   + +  F +  D + R  S     I+ W 
Sbjct: 78  HSFALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSD----IDKWF 133

Query: 145 RFATEREVEKLALDLF----EHDDWDHYTLPQFLYKNHWLRELKTTRCDYAIDGN---VE 197
            FA  + V+ L  D      ++ D D + +    ++N +    +      A D N   V 
Sbjct: 134 EFAMSKNVKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVG 193

Query: 198 WRSLKVLDIYESNLTDEVVENILSGSPMLESLKLH 232
           ++SLK L +   N++ E VE  LS  P+LE L +H
Sbjct: 194 FKSLKTLSLKSINVSSEAVEYFLSNCPLLERLSVH 228


>GSVIVT01010160001 assembled CDS
          Length = 394

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 47/245 (19%)

Query: 106 FVDKALIQYASPKIKNFAIDIDHNGRWLSKLQPRIESWVRFATEREVEKLALDLFEHDDW 165
           F+ + L+ +A P I  F I   +      ++ P I+ W+ F +  +V+++ L+L E + W
Sbjct: 46  FITQVLLLHAGP-IHKFQITTSN-----LRICPDIDQWILFLSRNDVKEILLELGECE-W 98

Query: 166 DHYTLPQFLYKNHWLRELKTTRCDYAIDGNVE-WRSLKVLDIYESNLTDEVVENILSGSP 224
             +T+P  L+    L  L+  RC+       + +  LK+L++++ ++T E +++++S  P
Sbjct: 99  --FTVPSCLFSCQKLTRLELVRCELHPPPTFKGFLHLKILNLHQVSITCEAIQSLVSSCP 156

Query: 225 MLESLKLHWCPRIHRIDVSSKCLKKLVIDGVAEGYXXXXXXXXXXXXXPYVEKLKILADW 284
           +LE L L +   +  +++S+  LK L ++G                              
Sbjct: 157 LLECLSLSYFDSL-ALNISAPNLKYLFLEG-----------------------------E 186

Query: 285 GKRKCKLMNVSSLVSVTLDFYLEVD------KERGNKLYKYVKYQNLVRQLLEKVHHVKE 338
            K  C L N   LVSVT+  Y+  D      +       K+      + +L+  ++  K 
Sbjct: 187 FKEIC-LENTPGLVSVTVAMYMSDDVVEHFEQSSSCNFIKFFGGAPHLERLIGHIYFTKF 245

Query: 339 LKIGN 343
           L IGN
Sbjct: 246 LSIGN 250


>GSVIVT01017697001 assembled CDS
          Length = 487

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 42/248 (16%)

Query: 34  RSYKRLKSPENEDRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQYIWTHVPNLTFE- 92
           R  K  K    ED +  L D +   I+S LP  E  ++T +LSKRW+ IWT    L F+ 
Sbjct: 4   RGCKAAKLVRGEDWLVELPDDILSTIISLLPLKE-AVRTGILSKRWRSIWTCHSELWFDA 62

Query: 93  -----LGESYKSVR----------QFASFVDKA--LIQYASP--KIKNFAIDIDHNGRWL 133
                +G+   S+           Q + FV++    + Y S   KI +F+I       ++
Sbjct: 63  ASVLGIGDCSTSMSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFM 122

Query: 134 SKLQPRIESWVRFATEREVEKLALDLFEH-------DD-----WDHYTLPQFLYK----N 177
           S     I+ W+  A  + VE + LDL E+       DD     +  Y  P  L+      
Sbjct: 123 S----HIDQWITCAVMKGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGR 178

Query: 178 HWLRELKTTRCDY-AIDGNVEWRSLKVLDIYESNLTDEVVENILSGSPMLESLKLHWCPR 236
             L+ L+   C   A+  +    SL  +D+   N++D+ ++++LS    LE L L  C  
Sbjct: 179 CTLKHLRLASCHLSALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNG 238

Query: 237 IHRIDVSS 244
           +  +  S+
Sbjct: 239 LVNLSFSA 246


>GSVIVT01016826001 assembled CDS
          Length = 175

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 43  ENEDRISALHDSLTHHILSFLPSTEDVIKTSVLSKRWQ--YIWTHVPNLTFELGESYKSV 100
           E  D+IS L D +   ILS LP T D+ +T+++SK W+  + ++ +P L F+  +   + 
Sbjct: 4   EQIDQISQLPDDILRSILSLLP-TRDLARTNLVSKAWRKLFAFSSLPILMFKSSDFLVAP 62

Query: 101 ---RQFASFVDKALIQYASPKIKNFAIDIDHNGRWLSKLQPRIESWVRFATEREVEKLAL 157
                 +SF++ A+  Y   + K+ +++       L+ ++  I+SW+  A ER+V++L L
Sbjct: 63  CKDTDVSSFIN-AIDSYLKLRQKDASLEKLRLHVHLNDVESLIDSWINAALERKVKELDL 121

Query: 158 DLFEHDDWDH--YTLPQFLYKNHWLRELKTTRCDYAIDGNVEWRSLKVL 204
            +          Y+LP  ++    +  L   R    I G+++  +L+ L
Sbjct: 122 FILPRGRARRKPYSLPAKIFAAIKITVLSLQRVIMEIYGDIDLSTLRKL 170