Jatropha Genome Database

JcCA0151401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151401.10 - phase: 2 /pseudo/partial
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003197001 assembled CDS                                       389   e-109
GSVIVT01003195001 assembled CDS                                       382   e-107
GSVIVT01020703001 assembled CDS                                       218   3e-57
GSVIVT01020702001 assembled CDS                                       208   2e-54
GSVIVT01029217001 assembled CDS                                       127   8e-30
GSVIVT01019756001 assembled CDS                                        61   5e-10
GSVIVT01031253001 assembled CDS                                        58   6e-09
GSVIVT01006627001 assembled CDS                                        52   2e-07
GSVIVT01007572001 assembled CDS                                        51   6e-07
GSVIVT01013217001 assembled CDS                                        50   8e-07
GSVIVT01013216001 assembled CDS                                        47   8e-06

>GSVIVT01003197001 assembled CDS
          Length = 388

 Score =  389 bits (999), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/260 (71%), Positives = 215/260 (82%), Gaps = 9/260 (3%)

Query: 12  ASPVKKFVSAVILDLDGTLINT---------VCLIKYGKQWDGREATRIVGKTPLEAATA 62
           A P+KK VS VILDLDGTL+NT         V L+KY KQW+G+ A +++GKTP EAA  
Sbjct: 4   AKPLKKLVSGVILDLDGTLLNTDGIVSEVLKVFLVKYEKQWNGKVAHKLIGKTPFEAAAV 63

Query: 63  VVEDYGLPCSTEEFITELTPMFSAQMCKIKALPGANRLIKHLRGHNVPMALASNSPRANV 122
           +VEDYGLPC+TEE ++E+TPMFS Q C IKALPGANRLIKHL GH VPMALASNSPRA++
Sbjct: 64  IVEDYGLPCTTEELMSEITPMFSNQWCNIKALPGANRLIKHLHGHRVPMALASNSPRASI 123

Query: 123 ESKISHHQGWKESFSVIIGGDEVKTGKPSPEIFLEAARRLNIDPSSCLVIEDSLPXXXXX 182
           ESKIS HQGWKESFSVIIGGDEV+ GKPSPEIFLEA++RL++ PS+CLVIEDSLP     
Sbjct: 124 ESKISCHQGWKESFSVIIGGDEVRMGKPSPEIFLEASKRLSVKPSNCLVIEDSLPGVMAG 183

Query: 183 XXXXXXXXXXPSFPKQSHLYTSADEVMNSLLDLRPEKWGLPAFEDWIEDTLPVEPWHIGG 242
                     PS PKQSH++ SADEV+NSLLDLRPE+WGLP+F+DW+EDTLPVEPW+IGG
Sbjct: 184 KAAGMEVVAVPSIPKQSHIFNSADEVINSLLDLRPEQWGLPSFQDWVEDTLPVEPWYIGG 243

Query: 243 PVIKGFGRGSKVLGVPTANI 262
           PVIKGFGRGSKVLGVPTAN+
Sbjct: 244 PVIKGFGRGSKVLGVPTANL 263


>GSVIVT01003195001 assembled CDS
          Length = 388

 Score =  382 bits (982), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/260 (70%), Positives = 212/260 (81%), Gaps = 9/260 (3%)

Query: 12  ASPVKKFVSAVILDLDGTLINT---------VCLIKYGKQWDGREATRIVGKTPLEAATA 62
           A P+KK VS VILDLDGTL+NT         V L+KY KQW+G+ A +++GKTP EAA  
Sbjct: 4   AKPLKKLVSGVILDLDGTLLNTDGIVSEVLKVFLVKYEKQWNGKVAHKLIGKTPFEAAAV 63

Query: 63  VVEDYGLPCSTEEFITELTPMFSAQMCKIKALPGANRLIKHLRGHNVPMALASNSPRANV 122
           +VEDYGLPC+TEE ++E+TPMFS Q C IKALPGANRLIKHL GH VP+ALASNSPRA++
Sbjct: 64  IVEDYGLPCTTEELMSEITPMFSNQWCNIKALPGANRLIKHLHGHGVPIALASNSPRASI 123

Query: 123 ESKISHHQGWKESFSVIIGGDEVKTGKPSPEIFLEAARRLNIDPSSCLVIEDSLPXXXXX 182
           ESKIS HQGWKESFSVIIGGDEV+ GKPSPEIF EA++RL++ PS+CLVIEDSLP     
Sbjct: 124 ESKISCHQGWKESFSVIIGGDEVRMGKPSPEIFFEASKRLSVKPSNCLVIEDSLPGVMAG 183

Query: 183 XXXXXXXXXXPSFPKQSHLYTSADEVMNSLLDLRPEKWGLPAFEDWIEDTLPVEPWHIGG 242
                     PS P QSH++ SADEV+NSLLDLRPE WGLP+F+DW+EDTLPVEPW+IGG
Sbjct: 184 KAAGMEVVAVPSIPNQSHIFNSADEVINSLLDLRPELWGLPSFQDWVEDTLPVEPWYIGG 243

Query: 243 PVIKGFGRGSKVLGVPTANI 262
           PVIKGFGRGSKVLGVPTAN+
Sbjct: 244 PVIKGFGRGSKVLGVPTANL 263


>GSVIVT01020703001 assembled CDS
          Length = 393

 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 154/239 (64%), Gaps = 10/239 (4%)

Query: 19  VSAVILDLDGTLINTV---------CLIKYGKQWDGREATRIVGKTPLEAATAVVEDYGL 69
           + AVI DLDGTL++T           L KYGK  D  +    +G + LEAA AV+++Y L
Sbjct: 40  IQAVIFDLDGTLLDTEKVTKNVLKEFLEKYGKVIDREQEDTRLGISQLEAAIAVIKEYDL 99

Query: 70  PCSTEEFITELTPMFSAQMCKIKALPGANRLIKHLRGHNVPMALASNSPRANVESKISHH 129
           P + ++FI E++P++  +    K LPG NRL+KHL+ H VP ALASNS + NV++KIS+H
Sbjct: 100 PLTPQQFIDEISPIYKERWPTAKPLPGVNRLMKHLQKHGVPFALASNSKKENVDAKISYH 159

Query: 130 QGWKESFSVIIGGDEVKTGKPSPEIFLEAARRLNIDPSSCLVIEDSLPXXXXXXXXXXXX 189
           QGWKE+F  ++G D+VK+GKPSP++FLEAA+R+ +D + CLVIEDSL             
Sbjct: 160 QGWKENFVAVLGSDQVKSGKPSPDLFLEAAKRMGVDAAHCLVIEDSLVGVRAANAAGMKV 219

Query: 190 XXXPSFPKQSHLYTSADEVMNSLLDLRPEKWGLPAFEDWIEDTLPVEPWHIGGPVIKGF 248
              PS  K  +  + AD V++SLL+ +PE W LP FEDW++  LP+EP +  G    GF
Sbjct: 220 AAVPSQSKADY-ASIADSVLHSLLEFQPELWDLPPFEDWVDSALPIEPIYASGLFSNGF 277


>GSVIVT01020702001 assembled CDS
          Length = 369

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/240 (46%), Positives = 146/240 (60%), Gaps = 12/240 (5%)

Query: 19  VSAVILDLDGTLINTVCLIK---------YGKQWDGREATRIVGKTPLEAATAVVEDYGL 69
           + AVI DLDGTL++T    K         +GK  D     + +G  P E+A  V+++Y L
Sbjct: 15  IQAVIFDLDGTLLDTEKFTKSTLKEFLENHGKVLDSENEDKRLGMGPQESAIDVIKEYDL 74

Query: 70  PCSTEEFITELTPMFSAQMCKIKALPGANRLIKHLRGHNVPMALASNSPRANVESKISHH 129
           P + ++F  E+ P++  +  K K LPGANRLI HL  H V  ALASNS  A VE KIS+H
Sbjct: 75  PLTPQQFFDEIIPIYKEKWPKAKPLPGANRLISHLHKHGVRFALASNSKTAGVEGKISYH 134

Query: 130 QGWKESFSVIIGGDEVKTGKPSPEIFLEAARRLNIDPSSCLVIEDSLPXXXXXXXXXXXX 189
           +GWKE FSVI+G D+VK+GKPSP++FLEAA+R+ +D + CLVIEDSL             
Sbjct: 135 EGWKEQFSVILGSDQVKSGKPSPDLFLEAAKRMVVDAAHCLVIEDSLVGVRAANAAGMKV 194

Query: 190 XXXPSFPKQSHLYTS-ADEVMNSLLDLRPEKWGLPAFEDWIEDTLPVEPWHIGGPVIKGF 248
              P  P     Y S AD V++SLL+ +PE W LP FEDW+  TLP+EP +  G    GF
Sbjct: 195 VAVP--PHSEADYASFADSVLHSLLEFQPELWDLPPFEDWVGSTLPIEPIYASGLFSNGF 252


>GSVIVT01029217001 assembled CDS
          Length = 234

 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 116/231 (50%), Gaps = 22/231 (9%)

Query: 16  KKFVSAVILDLDGTLINT---------VCLIKYGKQWDGREATRIVGKTPLEAATAVVED 66
           K  +S VI D+DG L++T         + L +Y K +D     +++GK  +EAA   VE+
Sbjct: 4   KTSISHVIFDMDGLLLDTEKFYTEVQEIILARYNKTFDWSLKAKMMGKKAIEAARVFVEE 63

Query: 67  YGLP--CSTEEFITELTPMFSAQMCKIKALPGANRLIKHLRGHNVPMALASNSPRANVES 124
            G+    S E+F+ E   M        + +PGA+RL+KHL    +P+ +A+ S R + E 
Sbjct: 64  TGISDSLSAEDFLVEREEMLRKLFPTSELMPGASRLVKHLHASGIPICVATGSHRRHFEL 123

Query: 125 KISHHQGWKESFS----VIIGGD-EVKTGKPSPEIFLEAARRLN---IDPSSCLVIEDSL 176
           K   H    E FS    V++G D EVK GKPSP+IFL AARR     +D    LV ED+ 
Sbjct: 124 KTQRH---GEVFSLMHHVVLGDDPEVKQGKPSPDIFLAAARRFEGGPVDSQKILVFEDAP 180

Query: 177 PXXXXXXXXXXXXXXXPSFPKQSHLYTSADEVMNSLLDLRPEKWGLPAFED 227
                           P        + +AD+V++SLLD  P  WGLP F D
Sbjct: 181 SGVGAAKNAGMYAVMVPDPRLDISFHEAADQVLSSLLDFNPNDWGLPPFPD 231


>GSVIVT01019756001 assembled CDS
          Length = 369

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 96  GANRLIKHLRGHNVPMALASNSPRANVESKISHHQGWKESFSVIIGGDEVKTGKPSPEIF 155
           G+   +  L  + +PMAL S  PR  +E+ I    G +  FSVI+  ++V  GKP PE+F
Sbjct: 221 GSQEFVNVLMNYKIPMALVSTRPRKTLETAIGT-IGIESYFSVIVAAEDVYRGKPDPEMF 279

Query: 156 LEAARRLNIDPSSCLVIEDS 175
           + AA+ LN  P  C+V  +S
Sbjct: 280 VYAAQLLNFIPERCIVFGNS 299


>GSVIVT01031253001 assembled CDS
          Length = 1002

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%)

Query: 93  ALPGANRLIKHLRGHNVPMALASNSPRANVESKISHHQGWKESFSVIIGGDEVKTGKPSP 152
             PGA  LI   + + + +A+AS++ R  V++ ++        F  I+  D  +  KP+P
Sbjct: 81  GFPGALELINQCKSNGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAP 140

Query: 153 EIFLEAARRLNIDPSSCLVIEDSL 176
           +IFL A++ L++ P  C+VIED+L
Sbjct: 141 DIFLAASKILDVPPGECIVIEDAL 164


>GSVIVT01006627001 assembled CDS
          Length = 192

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 95  PGANRLIKHLRGHNVPMALASNSPRANVESKISHHQGWK--ESFSVIIGGDEVKTGKPSP 152
           PG  RL++  +   + +A+ S + +++V   + +  G +  +     + GD+VK  KP P
Sbjct: 54  PGVLRLMEETKAAGIKLAVCSAATKSSVILCLENLIGIERFQGLDCFLAGDDVKEKKPDP 113

Query: 153 EIFLEAARRLNIDPSSCLVIEDSL 176
            I+  A +RL +    CLV+EDS+
Sbjct: 114 SIYQTAVKRLGVSEKDCLVVEDSV 137


>GSVIVT01007572001 assembled CDS
          Length = 324

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 20  SAVILDLDGTLINT------------VCLIKYGKQWDGR---EATRIVGKTPLEAATAVV 64
           SA++ D DG L++T                + G  WD     E  +I G    E  TA  
Sbjct: 82  SALLFDCDGVLVDTEKDGHRISFNDTFAERELGVTWDVDLYGELLKIGGGK--ERMTAYF 139

Query: 65  EDYGLPCST-------EEFITEL----TPMFSAQMCK--IKALPGANRLIKHLRGHNVPM 111
              G P          +EFI  L    T +F   + K  +   PG  +LI    G  V +
Sbjct: 140 NKTGWPEKAPKSEEERKEFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALGKGVNV 199

Query: 112 ALASNSPRANVESKISHHQGWKESFSV-IIGGDEVKTGKPSPEIFLEAARRLNIDPSSCL 170
           A+ S S    V + +S   G + +  + I  GD V   KP P I+  AA  L ++PS C+
Sbjct: 200 AVCSTSNEKAVSAIVSCLLGPERAEKIKIFAGDVVPRKKPDPAIYTLAASTLGVEPSRCV 259

Query: 171 VIEDS 175
           V+EDS
Sbjct: 260 VVEDS 264


>GSVIVT01013217001 assembled CDS
          Length = 253

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 19  VSAVILDLDGTLINTVCLIKYGKQ-------WDGRE-------ATRIVGKTPLEAATAVV 64
           + AV+ D+DGTL ++  L  Y  +       ++G            I GK   + A  + 
Sbjct: 22  LEAVLFDIDGTLCDSDPLHYYAFRELLLQIGYNGGVPITEEFFIENIAGKHGDDVARGIF 81

Query: 65  EDYGLPCSTEEFITELTPMFSA-QMCKIKALPGANRLIKHLRGHNVPMALASNSPRANVE 123
            D+ L    + F+ +   +F      ++K L G +++ K +    +  A  +N+PR N E
Sbjct: 82  PDWDLEKGLK-FMDDKEALFRKFAKEQVKPLDGLHKIRKWIEDRGLKRAAVTNAPRPNAE 140

Query: 124 SKISHHQGWKESFSVIIGGDEVKTGKPSPEIFLEAARRLNIDPSSCLVIEDS 175
             IS   G  + F  ++ G E    KP P+ +L+A   L +   S  + EDS
Sbjct: 141 LMISL-LGLSDFFQAVVIGSECDRAKPFPDPYLKALEVLQVSKDSTFIFEDS 191


>GSVIVT01013216001 assembled CDS
          Length = 253

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 19/174 (10%)

Query: 19  VSAVILDLDGTLINTVCLIKYG-----KQWDGREAT---------RIVGKTPLEAATAVV 64
           + AV+ D+DGTL ++  L  Y       Q D              +I GK   + A  + 
Sbjct: 22  LEAVLFDIDGTLCDSDPLHYYAFRELLLQIDYNGGVPITEEFFIEKIAGKHNDDIARGLF 81

Query: 65  EDYGLPCSTEEFITELTPMFSAQMCK--IKALPGANRLIKHLRGHNVPMALASNSPRANV 122
            ++ L    +   T+   +   ++ K  +K L G +++ K +    +  A  SN+PR N 
Sbjct: 82  PNWDLEKGLK--FTDDKEVLFRKLAKDQVKPLNGLHKIRKWIEDRGLKRAAVSNAPRPNA 139

Query: 123 ESKISHHQGWKESFSVIIGGDEVKTGKPSPEIFLEAARRLNIDPSSCLVIEDSL 176
           E  IS   G  + F  ++ G E    KP P+ +L+A   L +      + EDS+
Sbjct: 140 ELMISL-LGLSDFFHAVVVGSECDRAKPFPDPYLKALEVLQVSKDHTFIFEDSV 192