Jatropha Genome Database

JcCA0151201.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151201.30 - phase: 2 /partial
         (334 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009645001 assembled CDS                                       478   e-135
GSVIVT01031915001 assembled CDS                                       301   2e-82
GSVIVT01033326001 assembled CDS                                       170   8e-43
GSVIVT01022423001 assembled CDS                                       150   1e-36

>GSVIVT01009645001 assembled CDS
          Length = 379

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 265/319 (83%), Gaps = 1/319 (0%)

Query: 5   LTQLASRHYRRKVTSFLFSLWLALWPFLFEKINGTKVVFSGDAVPAKERVLIIANHSTEV 64
           L +L S  Y R+ TSF+F LWLALWPFLFEKIN TK +FSG+ VP  +RVL+IANH TEV
Sbjct: 51  LMRLFSIRYSRRTTSFIFGLWLALWPFLFEKINKTKFIFSGETVPEDQRVLLIANHRTEV 110

Query: 65  DWMYLWDLALRKGCLGSIKYILKRSLMKLPLFGWGFHILEFISVDRKWEVDEPVMRQMLS 124
           DWMY W+LA+RKGCLG IKYILK SLMKLP+ GWGFH+LEFISV+RKWEVDEP++RQ LS
Sbjct: 111 DWMYFWNLAMRKGCLGYIKYILKSSLMKLPVLGWGFHLLEFISVERKWEVDEPILRQKLS 170

Query: 125 TFRDPRDSLWLALFPEGTDFTEQKCLKSQKFAAEVGLPVLTNVLLPKTRGFCLCLEVLQG 184
           TF +P D LWLA+FPEGTDFTE+KC +SQKFAAE GLPVL NVLLPKTRGFC CLEVL+G
Sbjct: 171 TFINPADPLWLAVFPEGTDFTEEKCKRSQKFAAENGLPVLNNVLLPKTRGFCACLEVLRG 230

Query: 185 SLDSVYDITIAYKHQCPTFMDNVFGVGPSEVHIHVRRIPVKDIPTSDSEAATWLMNTFQF 244
           SLD+VYD++ AYKHQCP F+D +FGV PSEVH+HVRRIPV +IP ++SEAA WL++TFQ 
Sbjct: 231 SLDAVYDVSFAYKHQCPNFLDVLFGVDPSEVHMHVRRIPVNEIPETESEAAAWLIHTFQI 290

Query: 245 KDQLLSDFRAHGHFPNEGTQRELSTLNCLVNFTIVISLTAIFTYLTFSSSFWFKTYVILA 304
           KDQLLSDF  HGHFPN+GT+ E+S +  L NF++VI+LT IFT+LTF SS WFK +V L 
Sbjct: 291 KDQLLSDFNYHGHFPNQGTEGEVSIMKYLANFSVVIALTGIFTFLTFFSSIWFKIHVSLV 350

Query: 305 CAFLALVSYFKIWPLPITG 323
           CA++A  ++F I P    G
Sbjct: 351 CAYIA-STFFDIRPSTFLG 368


>GSVIVT01031915001 assembled CDS
          Length = 203

 Score =  301 bits (772), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 165/203 (81%)

Query: 122 MLSTFRDPRDSLWLALFPEGTDFTEQKCLKSQKFAAEVGLPVLTNVLLPKTRGFCLCLEV 181
           MLSTFRDPRD LWLA+FPEGTDFTEQKC++SQK+AAE GLP+L NVLLPKT+GFC CLE 
Sbjct: 1   MLSTFRDPRDPLWLAVFPEGTDFTEQKCIRSQKYAAEKGLPILKNVLLPKTKGFCACLED 60

Query: 182 LQGSLDSVYDITIAYKHQCPTFMDNVFGVGPSEVHIHVRRIPVKDIPTSDSEAATWLMNT 241
           L+GSLD+VYD+TI YKHQCP+F+DNVFGV PSEVH+HVRRIP+ +IPTS++E  TWLM+T
Sbjct: 61  LRGSLDAVYDLTIGYKHQCPSFLDNVFGVDPSEVHMHVRRIPLNNIPTSENEVTTWLMDT 120

Query: 242 FQFKDQLLSDFRAHGHFPNEGTQRELSTLNCLVNFTIVISLTAIFTYLTFSSSFWFKTYV 301
           F  KDQLLS+F + G FP++GT+  LST+ CLVNF  VI LT IFT+    SS WFK YV
Sbjct: 121 FILKDQLLSNFYSQGGFPHQGTEGTLSTMKCLVNFVAVIGLTGIFTFFALFSSIWFKIYV 180

Query: 302 ILACAFLALVSYFKIWPLPITGS 324
            L C +LA  +YF + P PI  S
Sbjct: 181 SLVCVYLASATYFNLRPSPILSS 203


>GSVIVT01033326001 assembled CDS
          Length = 387

 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 145/249 (58%), Gaps = 7/249 (2%)

Query: 50  AKERVLIIANHSTEVDWMYLWDLALRKGCLGSIKYILKRSLMKLPLFGWGFHILEFISVD 109
            KE  L+I+NH +++DW+  W LA R GCLGS   ++K+S   LP+ GW     E++ ++
Sbjct: 82  GKEHALLISNHRSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLE 141

Query: 110 RKWEVDEPVMRQMLSTFRDPRDSLWLALFPEGTDFTEQKCLKSQKFAAEVGLPVLTNVLL 169
           R W  DE +++  L   +D     WLALF EGT FT+ K L +Q++A   GLPV  NVL+
Sbjct: 142 RNWAKDESIIKSGLLRLKDYPQPFWLALFVEGTRFTQAKLLAAQEYATASGLPVPRNVLI 201

Query: 170 PKTRGFCLCLEVLQGSLDSVYDITIAYKHQCPT-FMDNVFGVGPSEVHIHVRRIPVKDIP 228
           P+T+GF   +  ++  + +VYD+T+A     P+  M  +F   PS VH+H++R  +K++P
Sbjct: 202 PRTKGFVSAVSHMRSFVPAVYDVTVAIPKTQPSPTMLRLFKGQPSAVHVHIKRHLMKELP 261

Query: 229 TSDSEAATWLMNTFQFKDQLLSDFRAHGHFPNEG----TQRELSTLNCLVNFTIVISLTA 284
            +D  AA W  + F  KD LL   +    F  EG    T R + +L  ++++  ++ L A
Sbjct: 262 ETDDAAAQWCRDVFVAKDALLDKHKVEDTF-GEGEFQDTGRPIKSLLVVISWACLLILGA 320

Query: 285 IFTYLTFSS 293
           +  +L +SS
Sbjct: 321 L-KFLQWSS 328


>GSVIVT01022423001 assembled CDS
          Length = 402

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 38  GTKV-VFSGDA----VPAKERVLIIANHSTEVDWMYLWDLALRKGCLGSIKYILKRSLMK 92
           G KV VF+ D+    +  KE  L+I NH +++DW+  W LA R  CLGS   ++K+SL  
Sbjct: 66  GVKVEVFAADSETFELMGKEHSLVICNHRSDIDWLVGWVLAQRSNCLGSTLAVMKKSLKF 125

Query: 93  LPLFGWGFHILEFISVDRKWEVDEPVMRQMLSTFRDPRDSLWLALFPEGTDFTEQKCLKS 152
           LP+ GW     +++ V+R W  DE  ++  L    D     WLALF EGT FT  K   +
Sbjct: 126 LPIIGWSMWFSDYVFVERSWAKDERTLKWGLERLEDFPRPFWLALFVEGTRFTHTKLSAA 185

Query: 153 QKFAAEVGLPVLTNVLLPKTRGFCLCLEVLQGSLDSVYDITIAYKHQCPT-FMDNVFGVG 211
           +++A    LP+ +NVL+P+T+GF   +  ++  + +VYDIT+A     P+  M  +    
Sbjct: 186 RQYAISSDLPIPSNVLIPRTKGFVAAVTHIRSFVPAVYDITVAVPRDQPSPTMLRILSGQ 245

Query: 212 PSEVHIHVRRIPVKDIPTSDSEAATWLMNTFQFKDQLLSDF 252
            S V+++++R  ++++P +D+  A W  +TF  KD LL  F
Sbjct: 246 SSVVNLYIKRHTIQELPVTDAGIAQWCKDTFVAKDALLEQF 286