Jatropha Genome Database

JcCA0151201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151201.10 + phase: 0 /partial
         (138 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009647001 assembled CDS                                       220   1e-58

>GSVIVT01009647001 assembled CDS
          Length = 857

 Score =  220 bits (561), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/127 (83%), Positives = 113/127 (88%)

Query: 2   HCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSSYCDTVAKRLACWISIQKCDK 61
           HCAPSEPSILQQLE VVVMPNY RLFP  ARK+FN F S YCD  AKRLACWISIQKCDK
Sbjct: 731 HCAPSEPSILQQLEVVVVMPNYRRLFPSVARKVFNFFISGYCDAAAKRLACWISIQKCDK 790

Query: 62  DGDDRLRVCHSACQSYNLACGASLDCSDQTLFSSEEEGEGQCTGSGEMKLSWLNRLGIRF 121
           DGD+RLRVCHSACQSYNLACGASLDCSD+TLFSS++EGEGQCTGSGEMKLSWLNRL  R 
Sbjct: 791 DGDNRLRVCHSACQSYNLACGASLDCSDETLFSSQDEGEGQCTGSGEMKLSWLNRLRSRL 850

Query: 122 FSSNTSL 128
             S++SL
Sbjct: 851 TFSSSSL 857