Jatropha Genome Database

JcCA0151191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151191.20 + phase: 0 /partial
         (265 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027662001 assembled CDS                                       497   e-141

>GSVIVT01027662001 assembled CDS
          Length = 371

 Score =  497 bits (1280), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/265 (89%), Positives = 252/265 (95%)

Query: 1   MSVIGQRGIHYLQKLKAANIPTELIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVAS 60
           M  I ++GIHY QKL AAN+P ELIE GQNRVIDASLTLIRERAKLKGELVRALGGA+AS
Sbjct: 31  MRNIARKGIHYWQKLNAANVPAELIENGQNRVIDASLTLIRERAKLKGELVRALGGALAS 90

Query: 61  SSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSSTEEGKELNDPRVLTDVGDVPVQE 120
           SSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTN++TEEGKELNDPRVLTDVGDVPVQE
Sbjct: 91  SSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNATTEEGKELNDPRVLTDVGDVPVQE 150

Query: 121 IRDCDVEDDRLMNVISDSVKLVMEEDPLRPLVLGGDHSISFPVVRAVSEKLGGPVDILHL 180
           IRDC V+DDRLM +IS+SVKLVMEEDPLRPLVLGGDHSISFPVVRAVSEK+GGPVDILHL
Sbjct: 151 IRDCGVDDDRLMKIISESVKLVMEEDPLRPLVLGGDHSISFPVVRAVSEKIGGPVDILHL 210

Query: 181 DAHPDIYHAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMR 240
           DAHPDIYH+FEGNKYSHAS FARIMEGGYARRLLQVG+RSIT EGREQGKRFGVEQYEMR
Sbjct: 211 DAHPDIYHSFEGNKYSHASPFARIMEGGYARRLLQVGLRSITSEGREQGKRFGVEQYEMR 270

Query: 241 TFSRDRQLLENLKLGEGAKGVYISI 265
           TFSRDR +LENLKLGEG KGVYIS+
Sbjct: 271 TFSRDRHILENLKLGEGVKGVYISL 295