Jatropha Genome Database

JcCA0151191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151191.10 - phase: 0 
         (551 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027661001 assembled CDS                                       562   e-160

>GSVIVT01027661001 assembled CDS
          Length = 536

 Score =  562 bits (1448), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/469 (60%), Positives = 329/469 (70%), Gaps = 57/469 (12%)

Query: 71  SQVIKYHNQTKHNFTNYARGPRGLDWANQPNPFRRYISAPLLSLQHFPTDNQTASSAADS 130
           +QV+KYHNQTKH+FTNYARGPRGLDWANQP PFRR+ SAPL                  +
Sbjct: 20  AQVLKYHNQTKHSFTNYARGPRGLDWANQPKPFRRFDSAPL-------VPLLHPPPPNQT 72

Query: 131 APLYHSIFNSLXXXXXXXXXXXXQLFYDSLALSAWKTTGFSTWSLRVNPSSGNLHPTEAY 190
            P Y S+F +L            QLF+DSLA+SAWKTTGFSTWSLRVNPSSGNLHPTE+Y
Sbjct: 73  PPPYSSVFLNLPPPKPISKSTISQLFFDSLAISAWKTTGFSTWSLRVNPSSGNLHPTESY 132

Query: 191 LIAPPIESLSSSSFVAHYAPKEHALELRATIPSDFFPKFFPRDSFLIGISSIFWREAWKY 250
           +IAP IES+S S+FVAHYAPKEH+LE                              AWKY
Sbjct: 133 IIAPAIESVSDSAFVAHYAPKEHSLE------------------------------AWKY 162

Query: 251 GERAFRYCNHDVGHXXXXXXXXXXGLGWDVKLLDGLGHKELERLMGLEIYQSFQVPDGPI 310
           GERAFRYCNHDVGH           LGWDVK+LDGLG+++L++LMGLEI+  F++P  P+
Sbjct: 163 GERAFRYCNHDVGHAIAAVSMAAAELGWDVKVLDGLGYEDLKKLMGLEIFPEFEIPARPV 222

Query: 311 KGKIPDIEFEHSDCLLLVFPKGATDFDVNYKELSSALMEFKNLDWKGKPNLLSKEHVCWD 370
           KGK P                    F+VNY+ELS A+  F  L WKGKPN+LS+EH+CWD
Sbjct: 223 KGKFP--------------------FNVNYRELSMAISRFSELKWKGKPNVLSREHICWD 262

Query: 371 IIYRTAEAVKKPLTLGERFLIDPFQGSGVCSDGSYKGFTVREIVRKRRSAVDMDGVTKID 430
           IIYRTAEAVKKPL +  +F IDPF  S + ++ SYK  TV E+VRKRRSAVDMDGV  + 
Sbjct: 263 IIYRTAEAVKKPLMIEHKFSIDPFHSSRLFNESSYKNLTVSEVVRKRRSAVDMDGVHVMQ 322

Query: 431 RETFYQILLHCVPSGSGTGESQKRQLALPFRVLSWDAEVHAALFVHRVTGLPKGLYFLVR 490
           R+TFYQILLHC+PSGS  G  Q RQL LPFRVLSWD+EVHA LFVH+V GLP GLYFLVR
Sbjct: 323 RDTFYQILLHCLPSGSQNGGKQGRQLGLPFRVLSWDSEVHAVLFVHKVAGLPSGLYFLVR 382

Query: 491 NEDHFHELKKATRAGFKWEKPEGCPDDLPLYELARGDCQQIAKQLSCHQ 539
           NEDHF +LKK TR+ FKW KPEGCPDDLPLYEL RGD Q++AK++SCHQ
Sbjct: 383 NEDHFDDLKKVTRSNFKWAKPEGCPDDLPLYELTRGDFQELAKRISCHQ 431