Jatropha Genome Database

JcCA0151141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151141.10 - phase: 0 /partial
         (521 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003839001 assembled CDS                                       545   e-155
GSVIVT01022573001 assembled CDS                                        53   3e-07

>GSVIVT01003839001 assembled CDS
          Length = 737

 Score =  545 bits (1403), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 315/458 (68%), Positives = 363/458 (79%)

Query: 63  IELKFQNEFLKSQFEGLKNNQSASEESQQRTEVSDQKTVGSTDVXXXXXXXXXXXXXXXX 122
           +EL  QNE+LKSQFEGL+   S S+ S Q+T  + Q+   S DV                
Sbjct: 1   MELNLQNEYLKSQFEGLQAFHSESDGSHQQTRETVQEGAASVDVKGLHEKIESLSSELFE 60

Query: 123 XKQTRGAAEVALNHLREAYSEADAKAQELLTKLTEAQQKLDQEIKEREEKYSELDSKFQR 182
            KQTR AAE AL HLR A+S ADAKAQEL TKL EAQQK++QEIKER+EKYSELDSKF R
Sbjct: 61  EKQTRVAAEEALKHLRAAHSAADAKAQELSTKLAEAQQKMEQEIKERDEKYSELDSKFSR 120

Query: 183 LHKRAKQRIQEVQKEKDDLEARFRDVNETAERASSQHSALQQELERTRQQANDALRAMDA 242
           LHKRAKQRIQ+VQKEKDDLEAR RD+NET ERASSQ S+LQQELERTRQQANDALRA+DA
Sbjct: 121 LHKRAKQRIQDVQKEKDDLEARLRDMNETTERASSQQSSLQQELERTRQQANDALRAIDA 180

Query: 243 ERQQLRSANNKLRDNIEELRRSFQPKENALEALQQTLLEKEQMLEDMRGLLQSAEEKRQA 302
           ERQQLRS NNKLRD I+ELRRSF+PKENA+E LQQ+L+EK+QMLEDM+GLLQ+AEEKRQA
Sbjct: 181 ERQQLRSENNKLRDKIDELRRSFEPKENAIETLQQSLMEKDQMLEDMKGLLQAAEEKRQA 240

Query: 303 SIAELSAKHQKNIENLEGQLNDALADRTKATETISSLQVLIAEKESEIAEMDAASSGEVA 362
           SIAELSAKHQK +E+LE QL DA+++RTKATETISSLQVLIAEKES+IAEMDAASSGE A
Sbjct: 241 SIAELSAKHQKTVESLEAQLADAVSERTKATETISSLQVLIAEKESKIAEMDAASSGEAA 300

Query: 363 RLRAALESVKGXXXXXXXXXXXXXXXXXXXSQGLKMKLEIAESNCIRAEIEAAKMRSQLE 422
           RLRAA+E+VKG                   SQ LK KLE AESNCIRAEIEAAK+RSQLE
Sbjct: 301 RLRAAMETVKGELVHLKHEHEKEKESWEAASQALKTKLEFAESNCIRAEIEAAKIRSQLE 360

Query: 423 SEVSVQRQMLNKKDAELLAAKEEINRLETEFSSYKVRAHALLQRKDSELAAAMDSEQLRX 482
            E+SVQ Q+L+ +DAEL+A+KEEI RLE+EFSSYKVRAHALLQ+K++ELAAA DSEQL+ 
Sbjct: 361 LELSVQTQLLSTRDAELMASKEEIKRLESEFSSYKVRAHALLQKKEAELAAAKDSEQLKA 420

Query: 483 XXXXXXXXXXXXSIISAERDKALQDLQDALAHRDKELA 520
                        + + ERD+ L+DLQDALA+ DKELA
Sbjct: 421 QEEALKEAEKEILLATEERDRILRDLQDALANHDKELA 458


>GSVIVT01022573001 assembled CDS
          Length = 341

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 37  NLVKENGLHDGIPLVENTQEQLVQMVIELKFQNEFLKSQFEGLKNNQSASEE-SQQRTEV 95
           N  KEN L D  P V+ T +QLV MV EL FQNE+LKSQ EGL+   S S+  S  R++V
Sbjct: 188 NHAKENELFDVKPHVDATHDQLVHMVTELIFQNEYLKSQSEGLQVFHSESDGLSLFRSKV 247

Query: 96  SDQKTV 101
           S  K +
Sbjct: 248 SPGKIL 253