Jatropha Genome Database

JcCA0151101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151101.10 - phase: 0 
         (651 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014990001 assembled CDS                                       791   0.0  
GSVIVT01035283001 assembled CDS                                       298   5e-81

>GSVIVT01014990001 assembled CDS
          Length = 646

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/652 (60%), Positives = 488/652 (74%), Gaps = 16/652 (2%)

Query: 1   MAVLCFVLDLCSLSPPLLRDLKQ----LANLYAIXXXXXXXXXXXXLRDRIGLCYVSNNR 56
           MAVLCF+LDL S+SPPLLRDLKQ    LAN YAI              DRIGLCY+  NR
Sbjct: 1   MAVLCFLLDLLSISPPLLRDLKQALLQLANFYAISPWR---------HDRIGLCYLLYNR 51

Query: 57  ISSSHELKIAYSPRGNFNLRDFHHAVNNLPGDAFLPEIDDSGALLSSDVKLPSVLSDQVL 116
           ISSS+ELKIAYSPR NF LRDFHHAVN+LP D F P+   SG + S+D+ L ++LSD+VL
Sbjct: 52  ISSSNELKIAYSPRENFGLRDFHHAVNSLPTDVFFPQTGHSGPISSADLHLSTILSDEVL 111

Query: 117 YSWGGKDFMRKVIVLSSCLTEKIDSDMKGILADAADKCVSVEFVLFEQSASYLSNVQENI 176
           YSWGGKD +RK+I+LSSC  + IDS ++  L +AADKCV VEFVLFEQ +S+LS++ +NI
Sbjct: 112 YSWGGKDIVRKIILLSSCFVQNIDSTLQNTLMEAADKCVLVEFVLFEQKSSHLSDIPDNI 171

Query: 177 NCFATSLSDLDNCSFQTYLPDTRVFHSLVKRWLQDLKDDMEEPLQARFIFKSNLVGSLNQ 236
           + FA  + DLDNCS QTY PD  V H LVKRWLQDLKDD+EEPLQA FIFK+NLVGS+NQ
Sbjct: 172 DNFAKQIHDLDNCSLQTYPPDVCVLHGLVKRWLQDLKDDIEEPLQACFIFKTNLVGSVNQ 231

Query: 237 ISCSLSISVSQIIDGFSACQTCRCHGIVLDNAVKDKADRPSCPVTGNDLGTANVIDNSVK 296
           ISC+ SIS + I DGFS CQTCRCHGI LD+ + +K   PSC VTG  LGT ++I+N VK
Sbjct: 232 ISCNFSISFNHITDGFSPCQTCRCHGIPLDDVIGNKIKVPSCWVTGVKLGTYDLIENFVK 291

Query: 297 VGDKTILFMPSFQSSMKLHQVSSPIDFNVIERTNLSSLSEGVMFGTSHYVAPSACNEIET 356
           +G++T+LF+PSF+S MKL QVSSPIDFN+IERTNL SLSEG++ G S++V PS C+++E 
Sbjct: 292 IGEQTMLFLPSFKSFMKLQQVSSPIDFNIIERTNLGSLSEGLIIGNSYFVTPSVCHDVEA 351

Query: 357 SSDEMFKPELNFQLFQGICSALHSMDQGLICSSYCNVETMRETAFHCYYILQPSENGPMX 416
           +SDE  K ELN QLFQG+CS L S+DQGL+CSS CN+ETMRE AFHCYYIL PS+ GPM 
Sbjct: 352 ASDEGDKTELNAQLFQGLCSTLRSLDQGLVCSSICNLETMREAAFHCYYILYPSDGGPML 411

Query: 417 XXXXXXXXXVLPRPDINPFIHSSVSKDIQNAIHESVLKIELRDYNPVLHERGFHQKLNLL 476
                    V P PD++  I SS++K+I+N+I  S+LK+ELRDYNPVLHERGFHQKLN L
Sbjct: 412 LRRLAGSEEVSPIPDVSRVIDSSLTKEIENSIESSLLKMELRDYNPVLHERGFHQKLNFL 471

Query: 477 VKESLQFGSIPPKQNEA-SELNSKQPNSSELNIKPNRILDTIVVEDEPSLLNRTVKEDKT 535
           VKESLQF SIPPK  E  SELN  +P+S E+  + N  +D    E  P L  +  ++  T
Sbjct: 472 VKESLQFRSIPPKLEEVNSELNLTEPDSLEVIAESNSAIDVANAEGTPQLDVKAGEDKAT 531

Query: 536 TSIAEEWEQLVVSEDPSIYSPACTSKPKIDILVLSSPDSNKQLDVKTSKILERLEVPRQL 595
            +IAEEWEQL+V+E P+IYSP+C  KPK++  VL   DS +QLDVKTS+ILERLE+PRQL
Sbjct: 532 ATIAEEWEQLIVNEVPNIYSPSCICKPKLEQSVLLPSDSTRQLDVKTSRILERLEIPRQL 591

Query: 596 KTKITSPILTGSSLSETGMPTKRPLIPFQHTHATEQSWSS--SQLMKPNFQR 645
           K +  SPI+T S +++     K+PLIPFQ  H T    +S  S+ MKPNFQR
Sbjct: 592 KKRALSPIITNSIMADGCALMKKPLIPFQPIHVTAAGRASIASKPMKPNFQR 643


>GSVIVT01035283001 assembled CDS
          Length = 276

 Score =  298 bits (763), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/263 (60%), Positives = 191/263 (72%), Gaps = 16/263 (6%)

Query: 1   MAVLCFVLDLCSLSPPLLRDLKQ----LANLYAIXXXXXXXXXXXXLRDRIGLCYVSNNR 56
           MAVLCF+LDL S+SPPLLRDLKQ    LAN YAI              DRIGLCY+ N R
Sbjct: 1   MAVLCFLLDLLSISPPLLRDLKQALLQLANFYAISPWR---------HDRIGLCYLYN-R 50

Query: 57  ISSSHELKIAYSPRGNFNLRDFHHAVNNLPGDAFLPEIDDSGALLSSDVKLPSVLSDQVL 116
           ISSS+ LKIAYSPR NF LRDFHHAVN+LP D F P+   S  + S D++L ++LSD+VL
Sbjct: 51  ISSSNGLKIAYSPRENFGLRDFHHAVNSLPTDVFSPQTGHSRPVSSVDLQLSTILSDEVL 110

Query: 117 YSWGGKDFMRKVIVLSSCLTEKIDSDMKGILADAADKCVSVEFVLFEQSASYLSNVQENI 176
           YSWGGKD +RKVI+LSS L +  D   K +   +ADKCV VEFVLFEQ +S+LS++ +NI
Sbjct: 111 YSWGGKDIVRKVILLSSRLHDA-DVARKSVWC-SADKCVLVEFVLFEQKSSHLSDIPDNI 168

Query: 177 NCFATSLSDLDNCSFQTYLPDTRVFHSLVKRWLQDLKDDMEEPLQARFIFKSNLVGSLNQ 236
           + F   +  +DNCS QTY PD  V H LVKRWLQDLKDD+EEPLQ RFI K+NLVG +NQ
Sbjct: 169 DNFVKQIHHIDNCSLQTYPPDVCVLHGLVKRWLQDLKDDIEEPLQVRFILKTNLVGYVNQ 228

Query: 237 ISCSLSISVSQIIDGFSACQTCR 259
           ISC+ SISV+ + DGFS CQ  +
Sbjct: 229 ISCNFSISVNHVTDGFSPCQVLK 251