Jatropha Genome Database

JcCA0150921.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150921.20 + phase: 0 
         (350 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024322001 assembled CDS                                       445   e-125
GSVIVT01008429001 assembled CDS                                        85   4e-17
GSVIVT01011715001 assembled CDS                                        80   1e-15
GSVIVT01011713001 assembled CDS                                        80   2e-15
GSVIVT01033285001 assembled CDS                                        73   2e-13
GSVIVT01032155001 assembled CDS                                        72   4e-13
GSVIVT01023969001 assembled CDS                                        58   7e-09
GSVIVT01008737001 assembled CDS                                        54   2e-07
GSVIVT01013797001 assembled CDS                                        48   7e-06

>GSVIVT01024322001 assembled CDS
          Length = 263

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/265 (81%), Positives = 235/265 (88%), Gaps = 2/265 (0%)

Query: 86  MHHGFYDPDVQVSGSILDHRAAQIRMIEEALRYAGVSEDPKHWPKNVVDVGCGIGGSSRY 145
           MHHGFY+PD   S +  DHR AQIRMIEE+LR+AGVSE+ +  PK VVDVGCGIGGSSRY
Sbjct: 1   MHHGFYEPDSAASDA--DHRFAQIRMIEESLRFAGVSEEGEKRPKRVVDVGCGIGGSSRY 58

Query: 146 LANKYGAKCQGISLSPVQVQRANSLAAAQGLADKVSFQVADALEQPFPDGQFDLVWSMES 205
           LA KYGA CQGI+LSP+Q QRA +LAA+QGLADKVSFQVADAL+QPFPDGQFDLVWSMES
Sbjct: 59  LAKKYGASCQGITLSPLQAQRAQTLAASQGLADKVSFQVADALDQPFPDGQFDLVWSMES 118

Query: 206 GEHMPDKKKFVSELARVAAPGGRIIIVTWCHRNLSPSEESLQEWEKQHLKKICDSYYLPE 265
           GEHMPDKKKFVSELARV APGG II+VTWCHR+LSPSEESL+  EK  L KIC +YYLP+
Sbjct: 119 GEHMPDKKKFVSELARVVAPGGTIILVTWCHRDLSPSEESLKPEEKALLDKICSAYYLPD 178

Query: 266 WCSAADYVQLLESLSLQDIKTADWSQYVAPFWPAVIRSALTWKGLTSLLRSGLKTIRGAL 325
           WCS  DYV+LLESLSLQDIK ADWS+YVAPFWPAVIRSALT+KG  SLLRSG KTIRGAL
Sbjct: 179 WCSTTDYVKLLESLSLQDIKAADWSEYVAPFWPAVIRSALTFKGFISLLRSGWKTIRGAL 238

Query: 326 VMPLMIQGYKKGLIKFAIITCRKPE 350
           VMPLMI+GYK GLIKFAIITCRKPE
Sbjct: 239 VMPLMIRGYKMGLIKFAIITCRKPE 263


>GSVIVT01008429001 assembled CDS
          Length = 491

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 130 KNVVDVGCGIGGSSRYLANKYGAKCQGISLSPVQVQRANSLAAAQGLADKVSFQVADALE 189
           + V+DVGCGIGG   Y+A  +  +  GI LS   V  A  L  A GL   V F+VAD  +
Sbjct: 284 QKVLDVGCGIGGGDFYMAENFDVEVVGIDLSINMVSFA--LERAIGLKCSVEFEVADCTK 341

Query: 190 QPFPDGQFDLVWSMESGEHMPDKKKFVSELARVAAPGGRIIIVTWCHRNLSPSEESLQEW 249
           + +PD  FD+++S ++  H+ DK        +   PGG+++I  +C R   PS E   E+
Sbjct: 342 KSYPDNTFDVIYSRDTILHIQDKPALFKSFFKWLKPGGKVLISDYCKRAGPPSSE-FSEY 400

Query: 250 EKQHLKKICDSYYLPEWCSAADYVQLL 276
            KQ    + D     E    A +++++
Sbjct: 401 IKQRGYDLHDVEAYGEMLRDAGFIEVI 427


>GSVIVT01011715001 assembled CDS
          Length = 475

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 3/124 (2%)

Query: 130 KNVVDVGCGIGGSSRYLANKYGAKCQGISLSPVQVQRANSLAAAQGLADKVSFQVADALE 189
           + V+DVGCGIGG   Y+A  +  +  GI LS   +  A  L  A G    V F+VAD  +
Sbjct: 268 QKVLDVGCGIGGGDFYMAEDFDVEVVGIDLSINMISIA--LERAIGRKCLVEFEVADCTK 325

Query: 190 QPFPDGQFDLVWSMESGEHMPDKKKFVSELARVAAPGGRIIIVTWCHRNLSPSEESLQEW 249
           + +PD  FD+++S ++  H+ DK        +   PGG+++I  +C R   PS E  QE+
Sbjct: 326 KTYPDNTFDVIYSRDTILHIQDKPALFKSFFKWLKPGGKVLITDYCKRAGPPSPE-FQEY 384

Query: 250 EKQH 253
            +Q 
Sbjct: 385 IEQR 388


>GSVIVT01011713001 assembled CDS
          Length = 484

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 130 KNVVDVGCGIGGSSRYLANKYGAKCQGISLSPVQVQRANSLAAAQGLADKVSFQVADALE 189
           + V+DVGCGIGG   Y+A  +  +  GI LS   +  A  L  A G    V F+VAD  +
Sbjct: 275 QKVLDVGCGIGGGDFYMAEDFNVEVVGIDLSINMISIA--LDRAIGRNRLVEFEVADCTK 332

Query: 190 QPFPDGQFDLVWSMESGEHMPDKKKFVSELARVAAPGGRIIIVTWCHRNLSPSEE 244
           + +PD  FD+++S ++  H+ DK        +   PGG+++I  +C R+  PS E
Sbjct: 333 KTYPDSTFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCKRSGPPSPE 387


>GSVIVT01033285001 assembled CDS
          Length = 343

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 16/183 (8%)

Query: 53  QEMDADSTQVLKKGIAELYDESSGVWEDIWGDHMHHGFYDPDVQVSGSILDHRAAQIRMI 112
           +E  A+ T ++ K     YD ++  +E  WG+  H         +  SI  H       +
Sbjct: 41  EERRANYTDMVNK----YYDLATSFYEYGWGESFHFASRWKGESLRESIKRHE--HFLAV 94

Query: 113 EEALRYAGVSEDPKHWPKNVVDVGCGIGGSSRYLANKYGAKCQGISLSPVQVQRANSLAA 172
           +  L+            + V+DVGCGIGG  R +A        G++ +  Q+ R   L  
Sbjct: 95  QLGLKCG----------QKVLDVGCGIGGPLREIARFSDTSITGLNNNEYQITRGKELNR 144

Query: 173 AQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKKKFVSELARVAAPGGRIIIV 232
             G+    +F++AD ++ PF +  FD V+++E+  H PD      E+ RV  PG      
Sbjct: 145 LAGVDKTCNFELADFMKMPFSNDTFDAVFAIEATCHAPDVLDCYKEIYRVLKPGQCFAAY 204

Query: 233 TWC 235
            WC
Sbjct: 205 EWC 207


>GSVIVT01032155001 assembled CDS
          Length = 421

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 130 KNVVDVGCGIGGSSRYLANKYGAKCQGISLSPVQVQRANSLAAAQGLADKVSFQVADALE 189
           + V+DVGCGIGG  R +A        G++ +  Q+ R   L    G+     F  AD ++
Sbjct: 170 QKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGRELNCIAGVDKTCDFVKADFMK 229

Query: 190 QPFPDGQFDLVWSMESGEHMPDKKKFVSELARVAAPGGRIIIVTWCHRN-LSPSEESLQE 248
            PF D  FD V+++E+  H PD      E+ RV  PG       WC  +   P+ +  Q+
Sbjct: 230 MPFSDNTFDAVYAIEATCHAPDALGCYKEIYRVLKPGQCFAAYEWCMTDAFDPNNQEHQK 289


>GSVIVT01023969001 assembled CDS
          Length = 183

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query: 151 GAKCQGISLSPVQVQRANSLAAAQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMP 210
           GA   GI+++  QV RA+      GL  +      + LE PFPD  FD  +S+E+  H P
Sbjct: 76  GANVVGITINEYQVNRAHLHNKKAGLESQCEVVCGNFLEMPFPDNSFDGAYSIEATCHAP 135

Query: 211 DKKKFVSELARVAAPGGRIIIVTW 234
             ++  SE+ RV  PG   +   W
Sbjct: 136 KLEEVYSEIFRVLKPGSMYVSYEW 159


>GSVIVT01008737001 assembled CDS
          Length = 281

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 55  MDADSTQVLKKGIAELYDESSGVWEDIWGDHMHHGFYDPDVQVSGSILDHRAAQIRMIEE 114
           ++ ++ + +   +   Y+  + ++E  WG   H   + P V        HR A     E 
Sbjct: 66  LEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFH---FSPAVPGK----SHRDATRLHEEM 118

Query: 115 ALRYAGVSEDPKHWPKNVVDVGCGIGGSSRYLANKYGAKCQGISLSPVQVQRANSLAAAQ 174
           A+    V    +     ++DVGCG+GG  R +A    A   GI+++  QV RA       
Sbjct: 119 AVDLIDVKPGDR-----ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKA 173

Query: 175 GLADKVSFQVADALEQPFPDGQFDLVWSMES 205
           GL         + L+ PF D  FD  +S+E+
Sbjct: 174 GLDSLCEVVCGNFLQMPFADNSFDGAYSIEA 204


>GSVIVT01013797001 assembled CDS
          Length = 258

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 11/126 (8%)

Query: 131 NVVDVGCGIGGSSRYLANKYGA--KCQGISLSPVQVQRANSLAAAQGLADKVSFQV---- 184
           +V+D+ CG G  +  L+ + G+  K  G   S  Q+  A+S    Q L  K  ++     
Sbjct: 73  DVLDLCCGSGDLAFLLSERVGSDGKVIGFDFSREQLSVASS---RQHLLSKACYKNIEWI 129

Query: 185 -ADALEQPFPDGQFDLVWSMESGEHMPDKKKFVSELARVAAPGGRIIIVTWCHRNLSPSE 243
             DA + PF D  FD +       ++ D+ K + E+ RV  PG R+ I+ + +++  P  
Sbjct: 130 EGDATKLPFSDCSFDAITMGYGLRNVLDRGKAMQEMFRVLKPGSRVSILDF-NKSTKPFI 188

Query: 244 ESLQEW 249
            S+QEW
Sbjct: 189 TSIQEW 194